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Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
1
accessible chromatin
1
eQTL
1
target gene predictions
Annotation Category
5
cis-regulatory elements
1
Genetic variant effects
1
Target gene links
Annotation type Category
6
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
RNA-seq
Available data
6
bed bed3+
File set status
7
released
Genome assembly (visualization)
6
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
7
tissue
Biosample term
18
large intestine
18
small intestine
8
sigmoid colon
7
transverse colon
6
colon epithelial cell
6
enterocyte
5
HT-29
5
Peyer's patch
4
HCT-116 cell
4
RKO
4
SW480
4
colonic mucosa
4
enteric smooth muscle cell
3
HCT116
3
duodenal mucosa
3
mucosa of rectum
2
enterocyte of epithelium of small intestine
2
muscle layer of colon
2
muscle layer of duodenum
2
paneth cell
2
small intestine goblet cell
1
Caco-2
1
Crypt of Lieberkuhn
1
LoVo
1
colon
1
colon - sigmoid
1
colon - transverse
1
colon sigmoid
1
crypt of Lieberkuhn
1
intestinal epithelial cell
1
intestinal epithelium
1
rectal smooth muscle tissue
1
rectum smooth muscle tissue
1
small intestine - terminal Ileum
Organ
7
intestine
7
large intestine
Life stage
4
adult
Date released
September, 2022
4
February, 2021
1
January, 2022
1
June, 2020
1
May, 2021
Software used
4
encode-ccres
1
abc
1
macs
1
qTLtools
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
annotation_type!
variant to gene
month_released!
September, 2018
September, 2022
Showing 7 of 7 results
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Download
FileSet
DSR899VFT
released
Annotation file set
: colon transverse eQTL of studay GTEx from eQTL Catalogue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR713ZKR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE transverse colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR944DFT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE transverse colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR132CRT
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE transverse colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR008SCU
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE transverse colon
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR692JFQ
released
Annotation file set
: enhancer-gene predicton of transverse_colon-ENCODE from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR464RYV
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Colon, Transverse from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP