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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
7
gene expression
5
accessible chromatin
5
candidate regulatory elements
4
target gene predictions
3
chromatin state
2
eQTL
1
binding sites
1
histone modifications
0
Fine-mapped variants
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
DNase-seq
1
snATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
3
Homo sapiens
Biosample type
5
primary cell
Biosample term
23
retina
20
pigmented layer of retina
18
monocyte
16
endothelial cell
16
fibroblast
13
excitatory neuron
13
macrophage
10
kidney
10
neural progenitor cell
10
pericyte cell
9
islet of Langerhans
9
retinal pigment epithelial cell
9
smooth muscle cell
8
B cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
T cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
adipocyte
6
embryonic stem cell
6
glutamatergic neuron
6
right atrium auricular region
6
tibial nerve
5
Ammon's horn
5
CD8-positive, alpha-beta T cell
5
caudate nucleus
5
chondrocyte
5
erythroblast
5
frontal cortex
5
heart
5
inhibitory neuron
5
omental fat pad
5
osteoblast
5
pancreas
5
pancreatic delta cell
5
putamen
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
5
subcutaneous adipose tissue
4
cerebellum
4
fibroblast of cardiac tissue
4
liver
4
memory B cell
4
natural killer cell
4
pancreatic stellate cell
4
type II pneumocyte
3
C1 segment of cervical spinal cord
3
T-helper 1 cell
3
amygdala
anterior cingulate cortex
3
body of pancreas
3
cerebellum (Hemisphere)
3
colon epithelial cell
3
cortical cell of adrenal gland
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
enterocyte
3
gabaergic neuron
3
gastrocnemius medialis(Muscle - Skeletal)
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
hypothalamus
3
left ventricle myocardium
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
nucleus accumbens
3
right lobe of liver
3
skin fibroblast
3
stomach
3
substantia nigra
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
CD4-positive helper T cell
2
HepG2
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
skeletal muscle myoblast
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
superior temporal gyrus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
CD1c-positive myeloid dendritic cell
1
CD4-Positive T-Lymphocytes
1
CD4-positive, alpha-beta T cell
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
DG-75 cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM12878
1
GM13976
1
GM13977
1
GM18507
1
GM19240
1
GM20000
1
GM23248
1
GP5d
1
Glioblastoma
1
H1-hESC
1
H4
1
H7-hESC
1
HAC cell
1
HAP-1
1
HBMEC cell
1
HCT-116 cell
1
HEK293
Date released
2
June, 2020
2
May, 2020
1
January, 2021
Software used
3
macs
Lab
4
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
4
AMP
1
T1D
RFA
4
AMP
1
T1D
biosample_term_name!
anterior cingulate cortex
organ_slims!
vasculature
Showing 5 of 5 results
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Download
FileSet
DSR988CEW
released
Annotation file set
: Accessible chromatin annotation for Blood Treg Wb83319432 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR553AHW
released
Annotation file set
: Accessible chromatin annotation for Blood Treg from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR591ZJC
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of regulatory_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR308PJT
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal regulatory T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR977ZGG
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated regulatory T cell
Lab:
AMP-T2D consortium
Project:
AMP