Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
995
candidate regulatory elements
980
target gene predictions
867
histone modifications
804
binding sites
772
accessible chromatin
551
chromatin state
236
gene expression
118
variant allelic effects
114
eQTL
49
differential activity
12
caQTL
4
variant to gene
2
Fine-mapped variants
2
other
1
representative DNase hypersensitivity sites
1
sQTL
Annotation Category
2
Genetic variant effects
1
cis-regulatory elements
Annotation type Category
2
RNA-seq
1
DNase-seq
Available data
1
tsv
File set status
3
released
Organism
3
Homo sapiens
Biosample type
2
tissue
1
in vitro differentiated cells
Biosample term
2
islet of Langerhans
1
myocyte
Organ
2
pancreas
Life stage
adult
Date released
2
March, 2023
1
February, 2021
Software used
2
qTLtools
1
altius-index
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
January, 2018
organ_slims!
liver
relevant_life_stage!
adult
Showing 3 of 3 results
table-tab-icon
matrix-icon
Download
FileSet
DSR288NOE
released
Annotation file set
: Fine-mapped sQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795YSV
released
Annotation file set
: Fine-mapped eQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR124JTW
released
Annotation file set
: DNase I Hypersensitive Sites (DHSs) defined using a consensus-based approach (https://github.com/Altius/Index) across 733 human biosamples. Each DHS is annotated with a signal level which can be used as a confidence score, as well as estimates for its summit position and summit variability (as captured by the 'core' coordinates).
Lab:
AMP-T2D consortium
Project:
AMP