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Schema
Citing CMDGA
Clear Filters
Annotation type
87
histone modifications
26
gene expression
25
accessible chromatin
17
eQTL
4
target gene predictions
3
binding sites
3
chromatin state
3
sQTL
2
Fine-mapped variants
2
hQTL
2
variant to gene
1
meQTL
1
variant allelic effects
Annotation Category
5
Genetic variant effects
Annotation type Category
5
RNA-seq
1
Expression arrays
Available data
1
bed bed3+
File set status
5
released
Genome assembly (visualization)
1
hg19
Organism
5
Homo sapiens
Biosample type
4
tissue
1
primary cell
Biosample term
4
islet of Langerhans
3
Ammon's horn
3
C1 segment of cervical spinal cord
3
amygdala
3
anterior cingulate cortex
3
body of pancreas
3
caudate nucleus
3
cerebellum
3
cerebellum (Hemisphere)
3
dorsolateral prefrontal cortex(Brain - Frontal Cortex (BA9))
3
frontal cortex
3
gastrocnemius medialis(Muscle - Skeletal)
3
hypothalamus
3
left ventricle myocardium
3
nucleus accumbens
3
omental fat pad
3
putamen
3
right atrium auricular region
3
right lobe of liver
3
subcutaneous adipose tissue
3
substantia nigra
3
tibial nerve
1
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
Organ
4
pancreas
Life stage
2
adult
Date released
3
March, 2023
1
August, 2021
1
May, 2021
Software used
3
qTLtools
1
limix
1
matrix-eQTL
1
sqtlseeker
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
organ_slims!
vasculature
Showing 5 of 5 results
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Download
FileSet
DSR288NOE
released
Annotation file set
: Fine-mapped sQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR795YSV
released
Annotation file set
: Fine-mapped eQTL
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR615JGJ
released
Annotation file set
: Lead variant-to-phenotype associations identified using permutations. Contains data for all phenotypes (eGene/Junction) with an sQTL effect at FDR 1%.
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR276ICN
released
Annotation file set
: sQTL annotation of islet of Langerhans from PMID:25201977
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR337BHM
released
Annotation file set
: PSI splicing quantitative trait loci (sQTLs) from RNA-seq of BLUEPRINT epigenome project of human immune cell types (CD14+ monocytes) from up to 197 individuals.
Lab:
AMP-T2D consortium
Project:
AMP