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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
target gene predictions
4
accessible chromatin
4
candidate regulatory elements
4
chromatin state
2
gene expression
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ATAC-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
5
hg19
GRCh38
Organism
4
Homo sapiens
Biosample type
3
in vitro differentiated cells
1
primary cell
Biosample term
21
retina
20
pigmented layer of retina
7
EndoC_BH1
6
embryonic stem cell
6
retinal pigment epithelial cell
5
SGBS preadipocytes
5
chondrocyte
4
adipocyte
4
endothelial cell
4
glutamatergic neuron
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
3
B cell
3
CD8-positive, alpha-beta T cell
3
memory B cell
3
monocyte
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
regulatory T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
extracellular matrix secreting cell
2
gamma-delta T cell
2
leukocyte
2
macrophage
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesenchymal stem cell
2
naive regulatory T cell
2
pancreatic acinar cell
2
pancreatic ductal cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
plasmacytoid dendritic cell
2
skeletal muscle fiber
2
skeletal muscle satellite cell
2
smooth muscle cell
2
type I muscle cell
2
type II muscle cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
T cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
gabaergic neuron
1
glial cell
1
glomerular visceral epithelial cell
1
immature natural killer cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
liver
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myofibroblast cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
neuron
1
neuron cell of Hypothalamus (neuron)
1
non-classical monocyte
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasma cell
1
preadipocyte
1
proximal tubule cells with injury markers
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle myoblast
1
stellate neuron
1
type I pneumocyte
1
type II pneumocyte
Organ
4
connective tissue
Date released
2
February, 2024
June, 2020
1
November, 2022
1
October, 2019
Software used
4
macs
Lab
3
AMP-T2D consortium
1
Stephen Parker, UMich
Project
4
AMP
RFA
3
AMP
1
AMP2
annotation_type!
binding sites
assembly!
GRCh38
biosample_term_name!
SW480
month_released!
June, 2020
Showing 4 of 4 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP