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Schema
Citing CMDGA
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Annotation type
16
gene expression
2
accessible chromatin
2
candidate regulatory elements
2
target gene predictions
binding sites
1
chromatin state
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
Annotation type Category
1
DNase-seq
1
snATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
2
Homo sapiens
Biosample type
2
primary cell
Biosample term
20
pigmented layer of retina
16
endothelial cell
9
retinal pigment epithelial cell
8
EndoC_BH1
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
pancreatic acinar cell
7
pancreatic alpha cell
6
endothelial cell of hepatic sinusoid
5
pancreatic delta cell
4
type II pneumocyte
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
glomerular visceral epithelial cell
3
type I pneumocyte
2
aortic endothelial cell
2
capillary endothelial cell
2
choroid plexus epithelial cell
2
club cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mesothelial cell
2
pancreatic polypeptide-secreting cell
2
renal cortical epithelial cell
1
basal cell of epidermis
1
brain microvascular endothelial cell
1
breast epithelium
1
bronchial epithelial cell
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
dermis microvascular lymphatic vessel endothelial cell
1
eccrine cell
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of prostate
1
epithelial cell of proximal tubule
1
esophagus squamous epithelium
1
foreskin keratinocyte
1
foveolar cell of stomach
1
gastric goblet cell
1
glomerular epithelium
goblet cell
1
granular cell of epidermis
1
iris pigment epithelial cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
mammary epithelial cell
1
myoepithelial cell
1
neuroendocrine cell
1
non keratinizing barrier epithelial cell
1
non-pigmented ciliary epithelial cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
paneth cell
1
parietal cell
1
parietal epithelial cell
1
peptic cell
1
placental villus capillary endothelial cell
1
pulmonary artery endothelial cell
1
renal cortex tubule
1
renal intercalated cell
1
renal principal cell
1
respiratory goblet cell
1
small intestine goblet cell
1
stomach neuroendocrine cell
1
thyroid follicular cell
1
tracheal epithelial cell
1
type B pancreatic cell
1
type I cell of adrenal cortex
1
type II cell of adrenal cortex
1
ureteric bud
1
urothelial cell
Organ
2
epithelium
1
adrenal gland
1
kidney
Date released
1
January, 2020
1
November, 2021
Software used
2
macs
Lab
1
AMP-T2D consortium
1
Bing Ren, UCSD
Project
1
AMP
1
ENCODE
RFA
1
AMP
1
ENCODE3
annotation_type!
binding sites
biosample_term_name!
goblet cell
Showing 2 of 2 results
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Download
FileSet
DSR023CGI
released
Annotation file set
: Accessible chromatin annotation of Zona Fasciculata Cortical Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP