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Schema
Citing CMDGA
Clear Filters
Annotation type
789
target gene predictions
788
chromatin state
787
candidate regulatory elements
5
histone modifications
4
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
snATAC-seq
1
ATAC-seq
Available data
4
bed bed3+
3
bam
3
bed gappedPeak
3
xls
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
3
primary cell
1
tissue
Biosample term
1
islet of Langerhans
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
Organ
5
epithelium
4
pancreas
artery
2
blood vessel
2
vasculature
Life stage
3
unknown
1
adult
Date released
267
June, 2020
190
November, 2021
54
January, 2020
54
May, 2020
43
February, 2024
37
November, 2022
30
August, 2021
27
January, 2021
26
May, 2021
24
February, 2023
16
April, 2020
11
May, 2022
10
November, 2019
9
February, 2021
8
October, 2019
4
January, 2022
4
September, 2022
1
September, 2018
Software used
4
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type!
binding sites
organ_slims!
artery
connective tissue
Showing 4 of 4 results
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Download
FileSet
DSR025RWZ
released
Annotation file set
: Accessible chromatin from snATAC-seq of delta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR055KAB
released
Annotation file set
: Accessible chromatin from snATAC-seq of beta cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR507522
released
Annotation file set
: Merged ATAC-seq sites in islets for 23 samples including 4 from Bing Ren at UCSD, 2 from Stephen Parker at UMich, and 17 from Mark McCarthy at Oxford (HP1507 and HP1507UW)
Lab:
AMP-T2D consortium
Project:
AMP