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Schema
Citing CMDGA
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Annotation type
3
accessible chromatin
3
gene expression
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
1
snATAC-seq
Available data
3
bigWig
2
bed bed3+
1
bigBed narrowPeak
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
tissue
1
primary cell
Biosample term
5
hepatocyte
4
endothelial cell of hepatic sinusoid
3
pancreatic ductal cell
2
adipocyte
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
2
endothelial cell
2
pancreatic acinar cell
2
pancreatic stellate cell
2
skeletal muscle fiber
1
CD4-positive helper T cell
1
Schwann cell
1
glial cell
1
leukocyte
1
mesenchymal stem cell
1
neural cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
pancreatic delta cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pancreatic polypeptide-secreting cell
1
pigmented layer of retina
1
preadipocyte
1
skeletal muscle satellite cell
1
smooth muscle cell
1
tissue-resident macrophage
1
type B pancreatic cell
1
type I muscle cell
1
type II muscle cell
Organ
3
epithelium
3
pancreas
Life stage
1
adult
Date released
3
February, 2024
2
November, 2021
1
January, 2021
1
June, 2020
1
October, 2019
Software used
3
macs
Lab
3
Kyle Gaulton, UCSD
Project
3
AMP
RFA
3
AMP
annotation_type!
differential activity
month_released!
March, 2023
Showing 3 of 3 results
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Download
FileSet
DSR473EZY
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of MUC5B Ductal
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR183WZN
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Ductal
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR553FGJ
released
Annotation file set
: pancreatic ductal cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP