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Citing CMDGA
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Annotation type
4
accessible chromatin
2
target gene predictions
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
4
type II pneumocyte
3
colon epithelial cell
3
type I pneumocyte
1
A549
1
HCT-116 cell
1
HT-29
1
IMR-90
1
NCI-H226 cell
1
PC-9
1
RKO
1
SW480
1
endothelial cell of artery
1
large intestine
1
lung neuroendocrine cell
1
right lung
1
sigmoid colon
1
transverse colon
1
upper lobe of left lung
Organ
4
epithelium
4
lung
0
large intestine
Date released
3
November, 2021
1
April, 2020
Software used
3
macs
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
3
ENCODE3
1
LungMap2
annotation_type!
gene expression
organ_slims!
artery
Showing 4 of 4 results
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Download
FileSet
DSR731YZV
released
Annotation file set
: ATAC-seq peaks in AT2 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR314DTK
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR413LRE
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR002AWQ
released
Annotation file set
: Accessible chromatin annotation of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE