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Schema
Citing CMDGA
Clear Filters
Annotation type
5
accessible chromatin
3
differential activity
3
gene expression
3
target gene predictions
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
4
snATAC-seq
1
ATAC-seq
Available data
5
bed bed3+
4
bigWig
1
bam
1
bed gappedPeak
1
bigBed narrowPeak
1
xls
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
5
primary cell
Biosample term
8
EndoC_BH1
6
islet of Langerhans
6
pancreatic beta cell
6
pancreatic ductal cell
5
pancreas
5
pancreatic alpha cell
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
2
pancreatic polypeptide-secreting cell
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
type B pancreatic cell
Organ
5
epithelium
5
pancreas
Life stage
2
adult
1
unknown
Date released
2
January, 2021
1
February, 2024
1
October, 2019
1
September, 2022
Software used
5
macs
Lab
3
Kyle Gaulton, UCSD
2
AMP-T2D consortium
Project
3
AMP
ENCODE
2
T1D
RFA
3
AMP
2
T1D
annotation_type!
pQTL
award.project!
ENCODE
month_released!
February, 2020
Showing 5 of 5 results
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Download
FileSet
DSR938VDA
released
Annotation file set
: Accessible chromatin from snATAC-seq of alpha cells from human pancreatic islet samples
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR018TPI
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGlow_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR185GHH
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of GCGhigh_alpha
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR110ITH
released
Annotation file set
: Pancreatic alpha cell accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593VJK
released
Annotation file set
: pancreatic alpha cell accessible chromatin annotation from snATAC
Lab:
Kyle Gaulton, UCSD
Project:
AMP