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Schema
Citing CMDGA
Clear Filters
Annotation type
696
gene expression
167
differential activity
108
eQTL
23
target gene predictions
16
variant allelic effects
8
accessible chromatin
7
caQTL
2
Fine-mapped variants
2
sQTL
2
variant to gene
1
binding sites
1
histone modifications
1
other
representative DNase hypersensitivity sites
Annotation Category
8
cis-regulatory elements
Annotation type Category
7
ATAC-seq
1
DNase-seq
File set status
8
released
Genome assembly (visualization)
hg19
387
GRCh38
Organism
8
Homo sapiens
Biosample type
7
in vitro differentiated cells
1
primary cell
Biosample term
2
adipose-derived stem cell
2
differentiating adipose-derived stem cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
glomerular endothelial cell
1
neuron cell of Hypothalamus (neuron)
Organ
1
epithelium
1
kidney
Date released
4
February, 2024
3
November, 2022
1
June, 2020
Software used
8
macs
Lab
5
AMP-T2D consortium
3
Struan F.A. Grant, CHOP
Project
8
AMP
RFA
5
AMP
3
AMP2
annotation_type!
representative DNase hypersensitivity sites
assembly!
hg19
biosample_term_name!
inhibitory neuron
Showing 8 of 8 results
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FileSet
DSR482VBC
released
Annotation file set
: Accessible chromatin of drastic dynamically reformed during the adipogenesis of hASCs, 24 hour
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR059ZYM
released
Annotation file set
: Accessible chromatin of differentiating adipose-derived stem cells, 8 hour
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR075MLB
released
Annotation file set
: Accessible chromatin of differentiating adipose-derived stem cells, 2 hour
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR629NXL
released
Annotation file set
: Accessible chromatin of drastic dynamically reformed during the adipogenesis of hASCs, 0 hour
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR593BUS
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Neuron).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR817DDX
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Hypothalamic Progenitor).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR885BSZ
released
Annotation file set
: Accessible chromatin annotation for Kidney HRGEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP