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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
2
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
4
in vitro differentiated cells
1
stem cell
Biosample term
56
HeLa-S3
42
H1-hESC
27
retina
26
K562
26
heart
24
stomach
22
A549
20
monocyte
20
pigmented layer of retina
19
CD14-positive monocyte
19
HFFc6
19
brain
18
adrenal gland
18
kidney
18
neural progenitor cell
17
lung
17
muscle of arm
17
small intestine
16
muscle of leg
16
placenta
16
thymus
15
large intestine
15
liver
14
B cell
14
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
hematopoietic multipotent progenitor cell
11
GM12878
11
adipocyte
11
adipose tissue
11
renal pelvis
11
right kidney
10
EndoC_BH1
10
MCF-7
10
heart left ventricle
10
pancreas
10
retinal pigment epithelial cell
10
right lung
10
spinal cord
9
CD4-positive, alpha-beta memory T cell
9
breast cancer cell
9
embryonic stem cell
9
islet of Langerhans
9
left kidney
9
osteoblast
9
spleen
8
H9
8
HepG2
8
endothelial cell of umbilical vein
8
fibroblast cell line
8
foreskin fibroblast
8
pituitary stalk
8
renal cortex interstitium
7
CD8-positive, alpha-beta memory T cell
7
cardiac muscle cell
7
keratinocyte
7
lymphocyte
7
melanoma
7
mesenchymal stem cell
7
mononuclear cell
7
ovary
7
psoas muscle
7
regulatory T cell
7
sigmoid colon
6
CD8-positive, alpha-beta T cell
6
HUES8
6
SGBS preadipocytes
6
T-helper 1 cell
6
chondrocyte
6
coronary artery
6
dendritic cell
6
fibroblast of cardiac tissue
6
fibroblast of lung
6
foreskin keratinocyte
6
gastrocnemius medialis
6
heart right ventricle
6
hepatocyte
6
mammary epithelial cell
6
mammary gland epithelial cell
6
pancreatic ductal cell
5
GM19240
5
IMR-90
5
Jurkat
5
T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
body of pancreas
5
bronchial epithelial cell
5
caudate nucleus
5
choroid plexus epithelial cell
5
epithelial cell of prostate
5
fibroblast of dermis
5
iPSC derived cell line
5
mesendoderm
5
muscle of trunk
5
trophoblast cell
4
AG04449 cell
4
AG04450 cell
4
AG09309 cell
4
AG09319 cell
4
AG10803 cell
4
Ammon's horn
4
BE(2)-C
4
BJ cell
4
Caco-2 cell
4
CyT49
4
GM06990
4
GM12864
4
GM12865
4
GM19238
4
GM19239
4
HAP-1
4
HCT-116 cell
4
HEK293
4
HL-60
4
HT-29
4
KARPAS-422 cell
4
LoVo cell
4
MM.1S
4
NAMALWA cell
4
NT2-D1 cell
OCI-LY7
4
PC-9
4
Peyer's patch
4
Rh-4 cell
4
SK-N-MC
4
SK-N-SH
4
U937
4
WERI-Rb-1
4
acute myeloid leukemia
4
aorta
4
breast epithelium
4
chorion membrane
4
chorionic villus
4
dermal fibroblast
4
endocrine pancreas
4
endothelial cell
4
erythroblast
4
fibroblast of mammary gland
4
fibroblast of pulmonary artery
4
fibroblast of villous mesenchyme
4
frontal cortex
4
glioblastoma multiforme cancer stem cell
4
glutamatergic neuron
4
hepatic stellate cell
4
kidney tubule cell
4
layer of hippocampus
4
macrophage
4
midbrain
4
natural killer cell
4
olfactory receptor cell
4
pancreatic alpha cell
4
prostate cancer cell line
4
prostate gland
4
right atrium auricular region
4
skeletal muscle myoblast
4
thyroid gland
4
tibial nerve
4
transverse colon
3
cardiac fibroblast
3
22Rv1
3
BJAB cell
3
CD1c-positive myeloid dendritic cell
3
CD4-positive helper T cell
3
CMK
3
Daoy
3
ECC-1
3
GM08714
3
GM10248
3
GM10266
3
GM12875
3
GM12891
3
GM12892
3
GM18505
3
GM18507
3
GM19099
3
GM19193
3
GM23248
3
H7-hESC
3
HAC cell
3
HBMEC cell
3
HCT116
3
HUES6
3
HuH-7
3
KBM-7
3
LHCN-M2
3
LNCAP
3
MCF 10A cell
3
MDA-MB-231 cell
3
MG63
3
NCCIT cell
3
NHEK
3
Normal Human Astrocytes
3
PANC-1 cell
3
PC-3
3
RPMI8226
3
RS4-11 cell
3
RWPE1
3
SAEC
Life stage
1
embryonic
Date released
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
1
September, 2022
Software used
2
macs
1
abc
1
nospecificsoft_customcode
1
r
Lab
4
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
5
AMP
RFA
5
AMP
biosample_term_name!
OCI-LY7
Showing 5 of 5 results
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Download
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR827VVM
released
Annotation file set
: Binding sites annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP