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Schema
Citing CMDGA
Clear Filters
Annotation type
7
accessible chromatin
2
histone modifications
1
binding sites
Annotation Category
8
cis-regulatory elements
Annotation type Category
7
ATAC-seq
DNase-seq
1
ChIP-seq
Available data
8
bed bed3+
7
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
7
GRCh38
Organism
8
Homo sapiens
Biosample type
8
tissue
Biosample term
22
retina
20
pigmented layer of retina
18
endothelial cell
17
fibroblast
15
monocyte
14
neural progenitor cell
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
12
macrophage
9
EndoC_BH1
9
breast cancer cell
9
embryonic stem cell
9
pancreatic ductal cell
9
pericyte cell
9
smooth muscle cell
8
astrocyte
8
kidney
8
pancreatic beta cell
8
retinal pigment epithelial cell
7
hepatocyte
7
melanoma
7
pancreatic acinar cell
7
pancreatic alpha cell
6
adipocyte
6
chondrocyte
6
fibroblast cell line
6
glutamatergic neuron
6
keratinocyte
5
SGBS preadipocytes
5
T cell
5
erythroblast
5
inhibitory neuron
5
islet of Langerhans
5
pancreatic delta cell
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
glioblastoma multiforme cancer stem cell
4
liver
4
neuroblastoma cell
4
osteoblast
4
pancreatic stellate cell
3
B cell
3
T-cell acute lymphoblastic leukemia
3
Tumor-derived cell line
3
acute myeloid leukemia
3
adipose tissue
3
adipose-derived stem cell
3
aortic endothelial cell
3
cardiac muscle cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
dermal fibroblast
3
diffuse intrinsic pontine glioma
3
enterocyte
3
fibroblast of cardiac tissue
3
gabaergic neuron
3
glial cell
3
liposarcoma
3
mammary epithelial cell
3
mammary gland epithelial cell
3
mesenchymal stem cell
3
neuronal stem cell
3
synovial sarcoma cell
3
triple-negative breast cancer
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
2
Burkitt's lymphoma
2
CD8-positive, alpha-beta T cell
2
COLO-320 cell
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
HS-SY-2 cell
2
HepG2
2
Jurkat
2
MCF-7
2
Mantle cell lymphoma
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RS4-11 cell
2
Rh-4 cell
2
SK-MEL-5 cell
2
SUM-185PE cell
2
T-lymphocyte
2
Th1 cell
2
adult acute myeloid leukemia
2
blood vessel smooth muscle cell
2
bronchial epithelial cell
2
chronic lymphocytic leukemia cell
2
chronic myeloid leukemia cell
2
colon adenocarcinoma
2
coronary artery
2
differentiating adipose-derived stem cell
2
diffuse large B-cell lymphoma
2
endocardial cell
2
endothelial cell of lymphatic vessel
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid progenitor cell
2
esophageal squamous cell carcinoma
2
fetal cardiomyocyte
2
foreskin fibroblast
2
gastric cancer cell
2
heart
2
hepatic stellate cell
2
immortal neural cell line cell
2
leukemic stem cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
lung fibroblast cell line
2
lymphoblastoid cell line
2
mast cell
2
megakaryocyte
2
memory B cell
2
mesangial cell
2
mesothelial cell
2
metastatic melanoma
2
mononuclear cell of bone marrow
2
neuroblastoma cell line
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
osteosarcoma
2
pancreas
2
pancreatic cancer cell
2
pancreatic cell line
2
pancreatic polypeptide-secreting cell
2
peripheral blood-derived erythroblast
2
plasma cell
2
preadipocyte
2
primordial germ cell
2
prostate derived cell line
2
prostate gland
2
regulatory T cell
2
schwann cell
2
skin fibroblast
2
smooth muscle cell of the coronary artery
2
smooth muscle cell of the esophagus
2
spleen
2
subcutaneous adipose tissue
2
tracheal epithelial cell
2
type I pneumocyte
1
143B
1
22Rv1
1
451Lu cell
1
501A
1
697 cell
1
769-P cell
1
786-O cell
1
A-1847 cell
1
A-375 cell
1
A-498 cell
1
A-673 cell
1
A2780 cell
1
A549
1
AG04449 cell
1
AG04450 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
AGS cell
1
ALL-SIL cell
1
Adipose stromal cell
1
AsPC-1 cell
1
B-CPAP cell
1
B-cell acute lymphoblastic leukemia
1
B-cell lymphoma cell
1
B-lymphoblast
1
B-lymphoblastoid cell line
1
B-lymphocyte
1
BCBL-1 cell
1
BE(2)-C
1
BEAS-2B cell
1
BEL-7402 cell
1
BG03
1
BICR 31
1
BJ cell
1
BJAB cell
1
BL-2 cell
1
BL-41 cell
1
BPE cell
1
BT-20 cell
1
BT-474 cell
1
BT-549 cell
1
BeWo cell
1
BxPC-3 cell
1
C666-1 cell
1
CA46 cell
1
CAL-51 cell
1
CCLP-1 cell
1
CCRF-CEM cell
1
CD1c-positive myeloid dendritic cell
1
CD34-positive, CD38-negative hematopoietic stem cell
1
CD4-positive, alpha-beta T cell
1
CD8-Positive T-Lymphocytes
1
CFPAC-1 cell
1
CHL-1 cell
1
CHLA-90 cell
1
CHP-134 cell
Disease term
2
diabetes mellitus,hypertensive disorder
1
chronic kidney disease
1
hypertensive disorder
1
hypertensive disorder, chronic kidney disease
Organ
8
kidney
Date released
7
August, 2021
1
February, 2021
Software used
8
macs
Lab
7
Katalin Susztak, Upenn
1
AMP-T2D consortium
Project
8
AMP
RFA
7
AMP2
1
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
Showing 8 of 8 results
table-tab-icon
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Download
FileSet
DSR715ILK
released
Annotation file set
: Binding sites annotation for Kidney Kidney from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR016ZOX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR073KQB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR880LWO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetes mellitus/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR772HPX
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for diabetic kidney disease/Hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR307LRO
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for control group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR574ZEL
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease/hypertension group
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR937TUB
released
Annotation file set
: Accessible chromatin of kidney from Katalin Susztak 75kidney Project ATAC-seq for chronic kidney disease group
Lab:
Katalin Susztak, Upenn
Project:
AMP