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Schema
Citing CMDGA
Clear Filters
Annotation type
10
gene expression
4
accessible chromatin
2
binding sites
2
variant allelic effects
1
caQTL
1
eQTL
1
histone modifications
1
target gene predictions
Annotation Category
6
cis-regulatory elements
Annotation type Category
3
snATAC-seq
2
ChIP-seq
1
ATAC-seq
Available data
6
bed bed3+
3
bigWig
File set status
6
released
Genome assembly (visualization)
18
hg19
GRCh38
Organism
6
Homo sapiens
Biosample type
6
primary cell
Biosample term
23
retina
20
pigmented layer of retina
9
breast cancer cell
9
embryonic stem cell
9
retinal pigment epithelial cell
8
EndoC_BH1
7
fibroblast cell line
7
melanoma
6
SGBS preadipocytes
6
adipocyte
6
chondrocyte
6
endothelial cell
6
monocyte
6
regulatory T cell
5
B cell
5
foreskin fibroblast
5
mammary epithelial cell
5
osteoblast
5
pancreatic ductal cell
5
prostate cancer cell line
4
CD8-positive, alpha-beta T cell
4
HepG2
4
MCF-7
4
Rh-4 cell
4
acute myeloid leukemia
4
dermal fibroblast
4
glioblastoma multiforme cancer stem cell
4
glutamatergic neuron
4
islet of Langerhans
4
keratinocyte
4
macrophage
4
mesenchymal stem cell
4
natural killer cell
4
neural progenitor cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic alpha cell
4
pancreatic beta cell
4
pancreatic delta cell
4
skeletal muscle myoblast
4
spinal cord
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose tissue
3
adipose-derived stem cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
bronchial epithelial cell
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
diffuse intrinsic pontine glioma
3
endothelial cell of umbilical vein
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
heart
3
liposarcoma
3
liver
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
mammary gland epithelial cell
3
memory B cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreas
3
primordial germ cell
3
prostate gland
3
renal epithelial cell
3
skin fibroblast
3
stomach
3
synovial sarcoma cell
3
tracheal epithelial cell
3
triple-negative breast cancer
2
786-O cell
2
A-673 cell
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM20000
2
GM23248
2
GP5d
2
HAP-1
2
HEK293-T-REx cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
2
HuH-7
2
Ishikawa
2
KARPAS-422 cell
2
KBM-7
2
Kasumi-1
2
L-1236 cell
2
L-428 cell
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PC-3
2
PC-9
2
PFSK-1 cell
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Raji cell
2
Rhabdomyosarcoma
2
SH-SY5Y cell
2
SJSA1
2
SK-MEL-5 cell
2
SUDHL5
2
SUM-185PE cell
Organ
6
epithelium
Life stage
1
adult
1
unknown
Date released
2
February, 2021
1
August, 2021
1
February, 2024
1
January, 2021
1
May, 2022
Software used
6
macs
Lab
3
AMP-T2D consortium
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
1
Stephen Parker, UMich
Project
5
AMP
1
T1D
RFA
3
AMP
2
AMP2
1
T1D
assembly!
GRCh38
biosample_term_name!
BJ cell
Jurkat
Showing 6 of 6 results
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Download
FileSet
DSR897TMQ
released
Annotation file set
: Accessible chromatin from snATAC-seq of endothelial cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR406JQN
released
Annotation file set
: Binding sites annotation for Cardiovascular Primary_endothelial_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR388QAH
released
Annotation file set
: Binding sites annotation for Cardiovascular Endothelial_Cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D