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Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
4
gene expression
3
target gene predictions
2
variant allelic effects
1
caQTL
1
eQTL
0
binding sites
Annotation Category
6
cis-regulatory elements
Annotation type Category
4
snATAC-seq
1
ATAC-seq
Available data
6
bed bed3+
4
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
tissue
Biosample term
10
endothelial cell of hepatic sinusoid
7
kidney
5
endothelial cell
5
hepatocyte
4
pancreatic ductal cell
4
pancreatic stellate cell
3
macrophage
3
pancreatic acinar cell
3
pancreatic alpha cell
3
pancreatic beta cell
3
pancreatic delta cell
2
T cell
2
capillary endothelial cell
2
extracellular matrix secreting cell
2
fibroblast
2
natural killer cell
2
pancreatic polypeptide-secreting cell
2
skeletal muscle fiber
2
smooth muscle cell
1
B cell
1
CD4-positive helper T cell
1
CD8-positive, alpha-beta T cell
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
embryonic stem cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
erythrocyte
1
glial cell
1
glomerular visceral epithelial cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
leukocyte
1
liver
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
megakaryocyte
1
memory B cell
1
mesenchymal stem cell
1
monocyte
1
myofibroblast cell
1
naive B cell
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
naive thymus-derived CD8-positive, alpha-beta T cell
1
natural killer cell mediated cytotoxicity
1
neural cell
1
neuroendocrine cell
1
neuron cell of Hypothalamus (neuron)
1
non-classical monocyte
1
pancreatic A cell
1
pancreatic D cell
1
pancreatic PP cell
1
pancreatic endothelial cell
1
pancreatic immune cell
1
pericyte cell
1
plasmacytoid dendritic cell
1
proximal tubule cells with injury markers
1
regulatory T cell
1
renal intercalated cell
1
renal principal cell
1
skeletal muscle satellite cell
1
stellate neuron
1
tissue-resident macrophage
1
type B pancreatic cell
1
type I muscle cell
1
type I pneumocyte
1
type II muscle cell
1
type II pneumocyte
Organ
5
epithelium
Life stage
2
adult
Date released
2
February, 2024
2
January, 2021
1
August, 2021
1
May, 2022
Software used
6
macs
Lab
AMP-T2D consortium
3
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Project
ENCODE
4
AMP
2
T1D
RFA
3
AMP2
2
T1D
1
AMP
award.project!
ENCODE
lab.title!
AMP-T2D consortium
Showing 6 of 6 results
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Download
FileSet
DSR369PUU
released
Annotation file set
: accessible chromatin annotation from scATAC-seq of Endothelial
Lab:
Kyle Gaulton, UCSD
Project:
AMP
FileSet
DSR426RPD
released
Annotation file set
: Accessible chromatin annotation of Endothelial cells from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR264NGG
released
Annotation file set
: Cell type chromatin broad peaks and bw of endothelial cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR579LZJ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of endothelial
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR234HXR
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of classical_monocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D