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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
30
histone modifications
7
candidate regulatory elements
5
accessible chromatin
5
target gene predictions
3
gene expression
1
chromatin state
0
binding sites
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ATAC-seq
2
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
4
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
24
retina
20
pigmented layer of retina
19
monocyte
18
endothelial cell
17
fibroblast
14
macrophage
14
neural progenitor cell
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
11
kidney
10
pancreatic ductal cell
10
pericyte cell
10
retinal pigment epithelial cell
9
EndoC_BH1
9
breast cancer cell
9
embryonic stem cell
9
hepatocyte
9
islet of Langerhans
9
smooth muscle cell
8
B cell
8
astrocyte
8
pancreatic beta cell
7
T cell
7
adipocyte
7
fibroblast cell line
7
melanoma
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
chondrocyte
6
glutamatergic neuron
6
heart
6
keratinocyte
6
pancreas
6
regulatory T cell
5
CD8-positive, alpha-beta T cell
5
erythroblast
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
liver
5
pancreatic delta cell
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
HepG2
4
Rh-4 cell
4
acute myeloid leukemia
4
cardiac muscle cell
4
dermal fibroblast
4
glioblastoma multiforme cancer stem cell
4
hepatic stellate cell
4
mammary epithelial cell
4
mammary gland epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
skin fibroblast
4
type II pneumocyte
3
cardiac fibroblast
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
adipose tissue
3
adipose-derived stem cell
3
aortic endothelial cell
3
brain
3
bronchial epithelial cell
3
choroid plexus epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse intrinsic pontine glioma
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
erythroid cell
3
foreskin fibroblast
3
gabaergic neuron
3
glial cell
3
glomerular visceral epithelial cell
3
heart left ventricle
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
plasma cell
3
primordial germ cell
3
prostate gland
3
right atrium auricular region
3
skeletal muscle myoblast
3
spinal cord
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
Caco-2 cell
2
D341 Med cell
2
Daoy
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM13976
2
GM13977
2
GM19240
2
GM20000
2
GM23248
2
GP5d
2
H1-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
KBM-7
2
Kasumi-1
2
L-1236 cell
2
L-428 cell
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Muller cell
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rhabdomyosarcoma
Date released
2
May, 2020
1
January, 2021
1
June, 2020
1
November, 2021
Software used
3
macs
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
3
AMP
1
ENCODE
1
T1D
RFA
3
AMP
1
ENCODE3
1
T1D
biosample_term_name!
GM19193
month_released!
October, 2022
Showing 5 of 5 results
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Download
FileSet
DSR552LZW
released
Annotation file set
: Accessible chromatin annotation of T Lymphocyte 1 (CD8+) from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR589PDF
released
Annotation file set
: Accessible chromatin annotation for Blood CD8+ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR805RPA
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of pancreatic_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR590HEP
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR935PWD
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP