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Schema
Citing CMDGA
Clear Filters
Annotation type
9
candidate regulatory elements
7
target gene predictions
5
chromatin state
3
accessible chromatin
2
binding sites
2
histone modifications
Annotation Category
5
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
1
DNase-seq
Available data
5
bed bed3+
2
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
2
GRCh38
Organism
5
Homo sapiens
Biosample type
3
cell line
2
primary cell
Biosample term
24
retina
20
pigmented layer of retina
19
monocyte
18
endothelial cell
17
fibroblast
14
macrophage
14
neural progenitor cell
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
11
kidney
10
pancreatic ductal cell
10
pericyte cell
10
retinal pigment epithelial cell
9
EndoC_BH1
9
breast cancer cell
9
embryonic stem cell
9
hepatocyte
9
islet of Langerhans
9
smooth muscle cell
8
B cell
8
astrocyte
8
pancreatic beta cell
7
T cell
7
adipocyte
7
fibroblast cell line
7
melanoma
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
chondrocyte
6
glutamatergic neuron
6
heart
6
keratinocyte
6
pancreas
6
regulatory T cell
5
CD8-positive, alpha-beta T cell
5
erythroblast
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
liver
5
pancreatic delta cell
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
HepG2
4
Rh-4 cell
4
acute myeloid leukemia
4
cardiac muscle cell
4
dermal fibroblast
4
glioblastoma multiforme cancer stem cell
4
hepatic stellate cell
4
mammary epithelial cell
4
mammary gland epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
skin fibroblast
4
type II pneumocyte
3
cardiac fibroblast
3
Jurkat
3
MCF-7
3
RS4-11 cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
adipose tissue
3
adipose-derived stem cell
3
aortic endothelial cell
3
brain
3
bronchial epithelial cell
3
choroid plexus epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse intrinsic pontine glioma
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
erythroid cell
3
foreskin fibroblast
3
gabaergic neuron
3
glial cell
3
glomerular visceral epithelial cell
3
heart left ventricle
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
plasma cell
3
primordial germ cell
3
prostate gland
3
right atrium auricular region
3
skeletal muscle myoblast
3
spinal cord
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
A549
2
AG04449 cell
2
AG04450 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
Ammon's horn
2
B-lymphocyte
2
BE(2)-C
2
BJ cell
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
Caco-2 cell
2
D341 Med cell
2
Daoy
2
ECC-1
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM13976
2
GM13977
2
GM19240
2
GM20000
2
GM23248
2
GP5d
2
H1-hESC
2
HAC cell
2
HAP-1
2
HBMEC cell
2
HCT-116 cell
2
HEK293
2
HL-60
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
2
HuH-7
2
IMR-90
2
Ishikawa
2
K562
2
KARPAS-422 cell
2
KBM-7
2
Kasumi-1
2
L-1236 cell
2
L-428 cell
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MDA-MB-231 cell
2
MG63
2
MM.1S
2
MOLM-13 cell
2
Mantle cell lymphoma
2
Muller cell
2
Myoblasts
2
NAMALWA cell
2
NB-4 cell
2
NCCIT cell
2
NHBE cell
2
NHDF cell
2
NHEK
2
NT2-D1 cell
2
Normal Human Astrocytes
2
OCI-AML3
2
OCI-LY7
2
PA-TU-8988T cell
2
PANC-1 cell
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
REH cell
2
RKO
2
RPMI8226
2
RWPE1
2
Rhabdomyosarcoma
Organ
3
mammary gland
Date released
2
February, 2021
2
November, 2021
1
June, 2020
October, 2022
Software used
5
macs
Lab
3
AMP-T2D consortium
2
Bing Ren, UCSD
Project
3
AMP
2
ENCODE
RFA
3
AMP
2
ENCODE3
month_released!
October, 2022
Showing 5 of 5 results
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Download
FileSet
DSR616QDE
released
Annotation file set
: Accessible chromatin annotation of Oligodendrocyte Precursor from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR111GKW
released
Annotation file set
: Accessible chromatin annotation of Fetal Oligodendrocyte Progenitor 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR120SDK
released
Annotation file set
: Binding sites annotation for Breast MCF-7-LTED from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR694FCO
released
Annotation file set
: Binding sites annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645VUL
released
Annotation file set
: Accessible chromatin annotation for Breast MCF-7 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP