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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
accessible chromatin
6
candidate regulatory elements
6
chromatin state
6
target gene predictions
2
gene expression
1
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
7
cis-regulatory elements
Annotation type Category
3
ATAC-seq
2
snATAC-seq
1
ChIP-seq
1
DNase-seq
Available data
7
bed bed3+
2
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
1
GRCh38
Organism
7
Homo sapiens
Biosample type
5
in vitro differentiated cells
2
primary cell
Biosample term
24
retina
20
pigmented layer of retina
19
monocyte
18
endothelial cell
18
fibroblast
14
macrophage
14
neural progenitor cell
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
11
kidney
11
retinal pigment epithelial cell
10
pancreatic ductal cell
10
pericyte cell
9
EndoC_BH1
9
breast cancer cell
9
embryonic stem cell
9
hepatocyte
9
islet of Langerhans
9
smooth muscle cell
8
B cell
8
astrocyte
8
osteoblast
8
pancreatic beta cell
7
T cell
7
adipocyte
7
erythroblast
7
fibroblast cell line
7
melanoma
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
chondrocyte
6
glutamatergic neuron
6
heart
6
keratinocyte
6
pancreas
6
regulatory T cell
5
CD8-positive, alpha-beta T cell
5
HepG2
5
cardiac muscle cell
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
inhibitory neuron
5
liver
5
mammary epithelial cell
5
pancreatic delta cell
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
MCF-7
4
Rh-4 cell
4
acute myeloid leukemia
4
choroid plexus epithelial cell
4
dermal fibroblast
4
endothelial cell of umbilical vein
4
glioblastoma multiforme cancer stem cell
4
hepatic stellate cell
4
mammary gland epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
skin fibroblast
4
spinal cord
4
type II pneumocyte
3
cardiac fibroblast
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
3
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose tissue
3
adipose-derived stem cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
brain
3
bronchial epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse intrinsic pontine glioma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
glial cell
3
glomerular visceral epithelial cell
3
heart left ventricle
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
plasma cell
3
primordial germ cell
3
prostate gland
3
renal epithelial cell
3
right atrium auricular region
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
Ammon's horn
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM15510
2
GM18505
2
GM18526
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM20000
2
GM23248
2
GP5d
2
HAP-1
2
HEK293-T-REx cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
Organ
7
connective tissue
Date released
2
February, 2024
1
February, 2021
1
June, 2020
1
November, 2021
1
November, 2022
1
October, 2019
Software used
7
macs
Lab
5
AMP-T2D consortium
1
Bing Ren, UCSD
1
Stephen Parker, UMich
Project
6
AMP
1
ENCODE
RFA
5
AMP
1
AMP2
1
ENCODE3
biosample_term_name!
GM10266
GM18951
Showing 7 of 7 results
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Download
FileSet
DSR654XDX
released
Annotation file set
: Open chromatin regions that exhibit differential accessibility in the lipid-challenged adipocytes
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR161NNW
released
Annotation file set
: Accessible chromatin of ATAC-seq in a human cell model of adipocytes day 14
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR987PCG
released
Annotation file set
: Accessible chromatin annotation of Adipocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR389QIM
released
Annotation file set
: Binding sites annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR083CQX
released
Annotation file set
: Cell type chromatin broad peaks and bw of adipocyte from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR645XXX
released
Annotation file set
: Adipocyte accessible chromatin annotation of overlapping ATAC-seq sites from 5 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP