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Schema
Citing CMDGA
Clear Filters
Annotation type
8
target gene predictions
7
candidate regulatory elements
6
chromatin state
4
eQTL
3
gene expression
2
accessible chromatin
1
binding sites
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
24
retina
20
pigmented layer of retina
19
monocyte
18
endothelial cell
17
fibroblast
14
macrophage
12
endothelial cell of hepatic sinusoid
12
excitatory neuron
11
kidney
10
pancreatic ductal cell
10
pericyte cell
9
EndoC_BH1
9
breast cancer cell
9
hepatocyte
9
islet of Langerhans
9
smooth muscle cell
8
astrocyte
8
osteoblast
8
pancreatic beta cell
7
erythroblast
7
fibroblast cell line
7
melanoma
7
pancreatic acinar cell
7
pancreatic alpha cell
6
B cell
6
T cell
6
glutamatergic neuron
6
heart
6
keratinocyte
6
pancreas
6
regulatory T cell
5
HepG2
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
inhibitory neuron
5
liver
5
mammary epithelial cell
5
pancreatic delta cell
5
prostate cancer cell line
5
retinal pigment epithelial cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
MCF-7
4
Rh-4 cell
4
acute myeloid leukemia
4
cardiac muscle cell
4
choroid plexus epithelial cell
4
dermal fibroblast
4
endothelial cell of umbilical vein
4
glioblastoma multiforme cancer stem cell
4
hepatic stellate cell
4
memory B cell
4
neural progenitor cell
4
neuroblastoma cell
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
spinal cord
4
type II pneumocyte
3
cardiac fibroblast
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
3
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
T-47D cell
3
T-helper 1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose tissue
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
brain
3
bronchial epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
glial cell
3
glomerular visceral epithelial cell
3
heart left ventricle
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
plasma cell
3
primordial germ cell
3
prostate gland
3
renal epithelial cell
3
right atrium auricular region
3
skin fibroblast
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
Ammon's horn
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CMK
2
COLO-320 cell
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
2
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM20000
2
GM23248
2
GP5d
2
HAP-1
2
HEK293-T-REx cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
2
HuH-7
2
Ishikawa
2
KARPAS-422 cell
2
KBM-7
2
Kasumi-1
2
L-1236 cell
2
L-428 cell
2
LHCN-M2
2
LNCAP
2
LoVo cell
2
MCF10A-Er-Src cell
2
MDA-MB-231 cell
2
MG63
Organ
3
adipose tissue
3
connective tissue
Date released
1
February, 2021
1
January, 2020
1
November, 2022
Software used
3
macs
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
COLO-829 cell
biosample_type!
in vitro differentiated cells
Showing 3 of 3 results
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Download
FileSet
DSR315TSA
released
Annotation file set
: Accessible chromatin of subcutaneous adipose tissue of 11 out of 17 individuals to generate chromatin accessibility profiles
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR382EKH
released
Annotation file set
: Binding sites annotation for Adipocyte Adipose_Tissue from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR849UDT
released
Annotation file set
: Adipose subcutaneous accessible chromatin annotation
Lab:
AMP-T2D consortium
Project:
AMP