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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
accessible chromatin
3
gene expression
2
target gene predictions
1
eQTL
0
binding sites
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
snATAC-seq
Available data
3
bed bed3+
3
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
1
Homo sapiens
Biosample type
3
primary cell
Biosample term
24
retina
20
pigmented layer of retina
19
monocyte
18
endothelial cell
18
fibroblast
14
macrophage
14
neural progenitor cell
13
excitatory neuron
12
endothelial cell of hepatic sinusoid
11
kidney
11
retinal pigment epithelial cell
10
pancreatic ductal cell
10
pericyte cell
9
EndoC_BH1
9
breast cancer cell
9
embryonic stem cell
9
hepatocyte
9
islet of Langerhans
9
smooth muscle cell
8
B cell
8
astrocyte
8
osteoblast
8
pancreatic beta cell
7
T cell
7
adipocyte
7
erythroblast
7
fibroblast cell line
7
melanoma
7
pancreatic acinar cell
7
pancreatic alpha cell
6
SGBS preadipocytes
6
chondrocyte
6
glutamatergic neuron
6
heart
6
keratinocyte
6
pancreas
6
regulatory T cell
5
CD8-positive, alpha-beta T cell
5
HepG2
5
cardiac muscle cell
5
fibroblast of cardiac tissue
5
foreskin fibroblast
5
inhibitory neuron
5
liver
5
mammary epithelial cell
5
pancreatic delta cell
5
prostate cancer cell line
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
MCF-7
4
Rh-4 cell
4
acute myeloid leukemia
4
choroid plexus epithelial cell
4
dermal fibroblast
4
endothelial cell of umbilical vein
4
glioblastoma multiforme cancer stem cell
4
hepatic stellate cell
4
mammary gland epithelial cell
4
memory B cell
4
mesenchymal stem cell
4
natural killer cell
4
neuroblastoma cell
4
neuronal stem cell
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
skin fibroblast
4
spinal cord
4
type II pneumocyte
3
cardiac fibroblast
3
A549
3
AG04449 cell
3
AG04450 cell
3
AG09309 cell
3
AG09319 cell
3
AG10803 cell
3
BE(2)-C
3
BJ cell
3
Caco-2 cell
3
ECC-1
3
GM06990
3
GM12864
3
GM12865
3
GM12878
3
GM19240
3
H1-hESC
3
HAC cell
3
HBMEC cell
3
HCT-116 cell
3
HEK293
3
HL-60
3
IMR-90
3
Jurkat
3
K562
3
NHEK
3
NT2-D1 cell
3
Normal Human Astrocytes
3
PANC-1 cell
3
RS4-11 cell
3
SAEC
3
SK-N-MC
3
SK-N-SH_RA
3
T-47D cell
3
T-cell acute lymphoblastic leukemia
3
T-helper 1 cell
3
Th1 cell
3
Tumor-derived cell line
3
U-87 MG
3
U2OS
3
WERI-Rb-1
3
WI-38 cell
3
adipose tissue
3
adipose-derived stem cell
3
aortic adventitial fibroblast
3
aortic endothelial cell
3
brain
3
bronchial epithelial cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
diffuse intrinsic pontine glioma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
erythroid cell
3
esophageal epithelial cell
3
fibroblast of mammary gland
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
glial cell
3
glomerular visceral epithelial cell
3
heart left ventricle
3
liposarcoma
3
lung fibroblast cell line
3
lymphoblastoid cell line
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
plasma cell
3
primordial germ cell
3
prostate gland
3
renal epithelial cell
3
right atrium auricular region
3
spleen
3
stomach
3
synovial sarcoma cell
3
tibial artery
3
tibial nerve
3
tracheal epithelial cell
3
triple-negative breast cancer
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
786-O cell
2
A-673 cell
2
Ammon's horn
2
B-lymphocyte
2
Burkitt's lymphoma
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
COLO-320 cell
2
COLO-829 cell
2
COLO205
2
D341 Med cell
2
DND-41 cell
2
Daoy
2
Ewing sarcoma
2
Fallopian Tube Carcinoma
2
G-401 cell
2
GM08714
2
GM10248
2
GM10266
2
GM10847
2
GM12801
2
GM12872
GM12873
2
GM12874
2
GM12875
2
GM12891
2
GM12892
2
GM13976
2
GM13977
2
GM15510
2
GM18505
2
GM18526
2
GM18951
2
GM19099
2
GM19193
2
GM19238
2
GM19239
2
GM20000
2
GM23248
2
GP5d
2
HAP-1
2
HEK293-T-REx cell
2
HS-SY-2 cell
2
HT-29
2
HUES6
2
HUES8
2
HeLa cell
Date released
2
May, 2020
1
January, 2021
Software used
1
macs
Lab
2
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Project
2
AMP
1
T1D
RFA
2
AMP
1
T1D
biosample_term_name!
GM12873
Showing 3 of 3 results
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Download
FileSet
DSR828VFT
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of naive_CD8_T
Lab:
Kyle Gaulton, UCSD
Project:
T1D
FileSet
DSR576LBA
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal naive thymus-derived CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR901XNB
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated naive thymus-derived CD8-positive, alpha-beta T cell
Lab:
AMP-T2D consortium
Project:
AMP