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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
37
candidate regulatory elements
21
chromatin state
21
target gene predictions
6
accessible chromatin
4
gene expression
2
variant allelic effects
1
binding sites
1
caQTL
1
eQTL
1
histone modifications
Annotation Category
6
cis-regulatory elements
1
Genetic variant effects
Annotation type Category
4
snATAC-seq
2
DNase-seq
1
ATAC-seq
Available data
7
bed bed3+
5
bigWig
File set status
7
released
Genome assembly (visualization)
7
hg19
4
GRCh38
Organism
7
Homo sapiens
Biosample type
4
primary cell
3
tissue
Biosample term
22
retina
20
pigmented layer of retina
18
endothelial cell
16
fibroblast
16
monocyte
13
excitatory neuron
13
macrophage
10
neural progenitor cell
10
pericyte cell
10
smooth muscle cell
9
kidney
8
EndoC_BH1
8
astrocyte
8
pancreatic beta cell
8
retinal pigment epithelial cell
7
hepatocyte
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic ductal cell
6
B cell
6
T cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
islet of Langerhans
5
SGBS preadipocytes
5
adipocyte
5
chondrocyte
5
erythroblast
5
inhibitory neuron
5
pancreatic delta cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD8-positive, alpha-beta T cell
4
coronary artery
4
liver
4
memory B cell
4
pancreatic stellate cell
4
type I muscle cell
4
type II muscle cell
4
type II pneumocyte
3
cardiac fibroblast
3
CD4-positive helper T cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
heart
3
heart left ventricle
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
natural killer cell
3
osteoblast
3
pancreas
3
regulatory T cell
3
type I pneumocyte
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of cardiac tissue
2
gamma-delta T cell
2
glial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
keratinocyte
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mature natural killer cell
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
naive regulatory T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
right atrium auricular region
2
schwann cell
2
smooth muscle cell of the coronary artery
smooth muscle cell of the esophagus
2
subcutaneous adipose tissue
2
tibial artery
2
tibial nerve
1
hindlimb muscle
1
Ammon's horn
1
CD4-positive, alpha-beta T cell
1
HepG2
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
Schwann cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
alveolar macrophage
1
ascending aorta
1
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
basal cell of epidermis
1
brain
1
brain microvascular endothelial cell
1
brain pericyte
1
cardiac endothelial cell
1
cardiac precursors
1
caudate nucleus
1
cerebellar cortex
1
cerebellum
1
cholangiocyte
1
choroid plexus epithelial cell
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
conventional dendritic cell
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
eccrine cell
1
endothelial cell of artery
1
endothelial cell of umbilical vein
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epithelial cell of proximal tubule
1
erythrocyte
1
extravillous trophoblast
1
fetal heart
1
fetal thymocyte
1
fibroblast of the aortic adventitia
1
forelimb muscle
1
foveolar cell of stomach
1
frontal cortex
1
gastric goblet cell
1
globus pallidus
1
glomerular endothelial cell
1
goblet cell
1
granular cell of epidermis
1
heart right ventricle
1
hepatoblast
1
hippocampal neuron
1
immature natural killer cell
1
intestinal tuft cell
1
kidney capillary endothelial cell
1
kidney distal convoluted tubule epithelial cell
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
kidney tubule cell
1
left cardiac atrium
1
left renal cortex interstitium
1
left renal pelvis
1
lower motor neuron
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary gland epithelial cell
1
mast cell
1
mature NK T cell
1
medulla oblongata
1
melanocyte
1
metanephros
1
microglial cell
1
microglial cell/astrocyte
1
midbrain
1
middle frontal gyrus
1
muscle of arm
1
muscle of leg
1
myeloid dendritic cell
1
myoepithelial cell
Organ
4
musculature of body
3
heart
Life stage
1
adult
1
child
1
embryonic
1
unknown
Date released
2
January, 2020
June, 2020
1
February, 2024
1
May, 2022
1
November, 2019
1
November, 2021
1
October, 2022
Software used
6
macs
1
eigenmt
1
rasqual
Lab
4
AMP-T2D consortium
2
Stephen Parker, UMich
1
Bing Ren, UCSD
Project
6
AMP
1
ENCODE
RFA
4
AMP
2
AMP2
1
ENCODE3
biosample_term_name!
smooth muscle cell of the esophagus
month_released!
June, 2020
Showing 7 of 7 results
table-tab-icon
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Download
FileSet
DSR704QRW
released
Annotation file set
: Accessible chromatin from snATAC-seq of type I muscle cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR470SUP
released
Annotation file set
: Accessible chromatin annotation of Type I Skeletal Myocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR085VQO
released
Annotation file set
: Chromatin site QTLs of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR209HNE
released
Annotation file set
: Cell type chromatin broad peaks and bw of type I muscle cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR270JSX
released
Annotation file set
: Accessible chromatin annotation of heart child from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR994QRK
released
Annotation file set
: Accessible chromatin annotation of heart adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR351NUN
released
Annotation file set
: Accessible chromatin annotation of heart
Lab:
AMP-T2D consortium
Project:
AMP