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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
4
cis-regulatory elements
3
Target gene links
Annotation type Category
5
DNase-seq
4
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
7
bed bed3+
File set status
7
released
Genome assembly (visualization)
7
hg19
Organism
7
Homo sapiens
Biosample type
6
in vitro differentiated cells
1
stem cell
Biosample term
107
monocyte
65
stomach
63
heart
60
HeLa-S3
55
kidney
50
brain
50
lung
50
muscle of arm
47
CD8-positive, alpha-beta T cell
47
small intestine
46
adrenal gland
44
placenta
43
large intestine
43
muscle of leg
42
A549
42
H1-hESC
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
36
neural progenitor cell
36
thymus
B cell
34
right lung
33
retina
32
K562
31
hematopoietic multipotent progenitor cell
31
right kidney
30
renal cortex interstitium
30
renal pelvis
29
liver
27
CD14-positive monocyte
27
left kidney
25
spinal cord
25
spleen
24
endothelial cell
23
CD4-positive, alpha-beta memory T cell
22
heart left ventricle
21
pericyte cell
20
fibroblast
20
pigmented layer of retina
19
HFFc6
19
hepatocyte
18
MCF-7
18
macrophage
17
foreskin keratinocyte
17
sigmoid colon
17
smooth muscle cell
17
trophoblast cell
16
T cell
16
adipocyte
16
adipose tissue
16
natural killer cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
ovary
15
psoas muscle
15
regulatory T cell
14
astrocyte
14
gastrocnemius medialis
14
pancreas
14
transverse colon
13
foreskin fibroblast
13
keratinocyte
13
mononuclear cell
13
pancreatic ductal cell
13
thyroid gland
12
CD4-positive, alpha-beta T cell
12
GM12878
12
HepG2
12
T-helper 1 cell
12
body of pancreas
12
excitatory neuron
12
fibroblast of cardiac tissue
12
muscle of trunk
12
retinal pigment epithelial cell
11
Peyer's patch
11
breast cancer cell
11
caudate nucleus
11
chorionic villus
11
endothelial cell of umbilical vein
11
mesenchymal stem cell
11
pancreatic beta cell
11
testis
11
tibial nerve
11
upper lobe of left lung
10
EndoC_BH1
10
T-helper 17 cell
10
cardiac muscle cell
10
endocrine pancreas
10
heart right ventricle
10
pancreatic acinar cell
10
skeletal muscle tissue
9
Rhabdomyosarcoma
9
T-helper 2 cell
9
coronary artery
9
fibroblast of lung
9
left renal cortex interstitium
9
lymphocyte
9
neurosphere
9
osteoblast
9
pancreatic alpha cell
9
right renal pelvis
9
skeletal muscle myoblast
9
skeletal muscle satellite cell
8
breast epithelium
8
gastric cancer cell
8
layer of hippocampus
8
mammary gland epithelial cell
8
pancreatic delta cell
8
pituitary stalk
8
skin fibroblast
7
22Rv1
7
B-lymphoblastoid cell line
7
SK-N-DZ
7
SK-N-SH
7
aorta
7
bronchial epithelial cell
7
embryonic stem cell
7
epithelial cell of prostate
7
esophageal adenocarcinoma
7
esophagus muscularis mucosa
7
esophagus squamous epithelium
7
fibroblast of dermis
7
kidney tubule cell
7
left renal pelvis
7
lower leg skin
7
mammary epithelial cell
7
neuroblastoma cell
7
neutrophil
7
omental fat pad
7
prostate gland
7
right atrium auricular region
7
temporal lobe
7
trophoblast
6
Ammon's horn
6
Chondroid Chordoma
6
HAP-1
6
HEK293
6
HT-29
6
IMR-90
6
MM.1S
6
NAMALWA cell
6
OCI-LY7
6
PC-9
6
SGBS preadipocytes
6
WI38
6
colon epithelial cell
6
diffuse intrinsic pontine glioma
6
endometrium adenocarcinoma
6
erythroblast
6
esophagus
6
eye
6
immortal human breast epithelial cell line cell
6
islet of Langerhans
6
mesendoderm
6
neuronal stem cell
6
parathyroid adenoma
6
substantia nigra
6
thoracic aorta
6
tibial artery
6
tongue
5
CD1c-positive myeloid dendritic cell
5
CD4-positive helper T cell
5
CMK
5
CyT49
5
GM06990
5
GM12864
5
GM12865
5
GM18507
5
GM19240
5
GM23248
5
H7-hESC
5
HCT116
5
HL-60
5
HUES8
5
Jurkat
5
KARPAS-422 cell
5
LHCN-M2
5
LNCAP
5
LNCaP clone FGC
5
LoVo cell
5
MG63
5
PC-3
5
RPMI8226
5
RWPE1
5
SW480
5
T-cell
5
T47D
5
angular gyrus
5
ascending aorta
5
chorion membrane
5
cingulate gyrus
5
colonic mucosa
5
dermis blood vessel endothelial cell
5
glomerular visceral epithelial cell
5
glutamatergic neuron
5
limb
5
myoepithelial cell of mammary gland
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
putamen
Life stage
3
embryonic
Date released
2
February, 2021
2
September, 2022
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
macs
2
r
1
abc
1
encode-ccres
1
nospecificsoft_customcode
Lab
6
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
7
AMP
RFA
7
AMP
biosample_term_name!
B cell
Showing 7 of 7 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR042QDJ
released
Annotation file set
: Histone modifications annotation for Pluripotent stem cell hESC_derived_mesendodermal_cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP