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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
5
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
64
stomach
62
heart
60
HeLa-S3
53
kidney
50
lung
50
muscle of arm
47
brain
47
small intestine
46
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
H1-hESC
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
35
thymus
34
right lung
32
retina
31
K562
31
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
30
renal pelvis
28
B cell
27
CD14-positive monocyte
27
left kidney
27
liver
25
spleen
23
CD4-positive, alpha-beta memory T cell
23
spinal cord
21
heart left ventricle
20
neural progenitor cell
20
pigmented layer of retina
19
HFFc6
19
monocyte
18
sigmoid colon
17
adipose tissue
16
MCF-7
16
foreskin keratinocyte
16
psoas muscle
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
adipocyte
15
ovary
15
pancreas
14
gastrocnemius medialis
14
transverse colon
13
CD8-positive, alpha-beta T cell
13
body of pancreas
13
hepatocyte
13
mononuclear cell
13
muscle of trunk
13
thyroid gland
12
T-helper 1 cell
12
chorionic villus
12
endothelial cell of umbilical vein
12
heart right ventricle
12
natural killer cell
11
GM12878
11
Peyer's patch
11
endocrine pancreas
11
foreskin fibroblast
11
mesenchymal stem cell
11
regulatory T cell
11
retinal pigment epithelial cell
11
tibial nerve
10
CD4-positive, alpha-beta T cell
10
T cell
10
T-helper 17 cell
10
T-helper 2 cell
10
cardiac muscle cell
10
caudate nucleus
10
fibroblast of lung
10
neurosphere
10
testis
10
upper lobe of left lung
9
EndoC_BH1
9
breast epithelium
9
coronary artery
9
esophagus squamous epithelium
9
layer of hippocampus
9
left renal cortex interstitium
9
left renal pelvis
9
omental fat pad
9
osteoblast
9
pituitary stalk
9
right renal pelvis
9
skeletal muscle tissue
8
aorta
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of cardiac tissue
8
fibroblast of dermis
8
lower leg skin
8
lymphocyte
8
right atrium auricular region
8
skeletal muscle myoblast
7
HepG2
7
SK-N-DZ
7
SK-N-SH
7
ascending aorta
7
bronchial epithelial cell
chorion membrane
7
embryonic stem cell
7
esophagus
7
eye
7
islet of Langerhans
7
kidney tubule cell
7
mammary gland epithelial cell
7
neutrophil
7
parathyroid adenoma
7
temporal lobe
7
trophoblast
6
22Rv1
6
Ammon's horn
6
SGBS preadipocytes
6
T-cell
6
WI38
6
angular gyrus
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
fibroblast of breast
6
foreskin melanocyte
6
frontal cortex
6
gastroesophageal sphincter
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
keratinocyte
6
limb
6
mesendoderm
6
mucosa of rectum
6
muscle layer of colon
6
muscle layer of duodenum
6
myoepithelial cell of mammary gland
6
naive T cell
6
olfactory receptor cell
6
pancreatic ductal cell
6
prostate gland
6
right renal cortex interstitium
6
substantia nigra
6
thoracic aorta
6
tibial artery
6
tongue
5
HAP-1
5
HCT116
5
HEK293
5
HT-29
5
HUES8
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
astrocyte
5
bipolar neuron
5
chondrocyte
5
choroid plexus epithelial cell
5
endothelial cell
5
globus pallidus
5
glomerular endothelial cell
5
kidney glomerular epithelial cell
5
mammary epithelial cell
5
mesodermal cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neural cell
5
pancreatic beta cell
5
putamen
5
skeletal muscle satellite cell
5
skin fibroblast
5
smooth muscle cell
5
stomach smooth muscle
5
urinary bladder
5
uterus
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CMK
4
Caki2
4
CyT49
4
Daoy
4
GM04503
4
GM04504
4
GM06990
4
GM10248
4
GM10266
4
GM12864
4
GM12865
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
chorion membrane
Showing 6 of 6 results
table-tab-icon
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP