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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
binding sites
1
chromatin state
1
histone modifications
Annotation Category
3
Target gene links
3
cis-regulatory elements
Annotation type Category
5
DNase-seq
3
ChIP-seq
1
ATAC-seq
1
H3K27ac ChIP-Seq
1
pCHi-C
Available data
6
bed bed3+
File set status
6
released
Genome assembly (visualization)
6
hg19
Organism
6
Homo sapiens
Biosample type
5
in vitro differentiated cells
1
stem cell
Biosample term
64
stomach
heart
60
HeLa-S3
53
kidney
50
lung
50
muscle of arm
47
brain
47
small intestine
46
adrenal gland
43
muscle of leg
42
large intestine
42
placenta
41
A549
41
H1-hESC
41
common myeloid progenitor, CD34-positive
41
muscle of back
39
left lung
35
thymus
34
right lung
32
B cell
32
retina
31
K562
31
right kidney
30
hematopoietic multipotent progenitor cell
30
renal cortex interstitium
30
renal pelvis
27
CD14-positive monocyte
27
left kidney
27
liver
25
spleen
23
CD4-positive, alpha-beta memory T cell
23
endothelial cell
23
spinal cord
21
heart left ventricle
21
monocyte
21
pericyte cell
20
fibroblast
20
neural progenitor cell
20
pigmented layer of retina
19
HFFc6
17
CD8-positive, alpha-beta T cell
17
adipose tissue
17
macrophage
17
sigmoid colon
17
smooth muscle cell
16
MCF-7
16
adipocyte
16
foreskin keratinocyte
16
trophoblast cell
15
CD8-positive, alpha-beta memory T cell
15
H9
15
T cell
15
hepatocyte
15
ovary
15
psoas muscle
14
astrocyte
14
gastrocnemius medialis
14
natural killer cell
14
pancreas
14
transverse colon
13
body of pancreas
13
excitatory neuron
13
mononuclear cell
13
regulatory T cell
13
thyroid gland
12
CD4-positive, alpha-beta T cell
12
T-helper 1 cell
12
chorionic villus
12
endothelial cell of umbilical vein
12
heart right ventricle
12
muscle of trunk
11
GM12878
11
Peyer's patch
11
endocrine pancreas
11
fibroblast of cardiac tissue
11
foreskin fibroblast
11
mesenchymal stem cell
11
pancreatic beta cell
11
pancreatic ductal cell
11
retinal pigment epithelial cell
11
tibial nerve
10
T-helper 17 cell
10
T-helper 2 cell
10
cardiac muscle cell
10
caudate nucleus
10
fibroblast of lung
10
keratinocyte
10
pancreatic acinar cell
10
testis
10
upper lobe of left lung
9
EndoC_BH1
9
breast epithelium
9
coronary artery
9
esophagus squamous epithelium
9
layer of hippocampus
9
left renal cortex interstitium
9
left renal pelvis
9
mammary gland epithelial cell
9
neurosphere
9
pancreatic alpha cell
9
pituitary stalk
9
right renal pelvis
9
skeletal muscle satellite cell
9
skeletal muscle tissue
8
aorta
8
colon epithelial cell
8
dermis blood vessel endothelial cell
8
epithelial cell of prostate
8
esophagus muscularis mucosa
8
fibroblast of dermis
8
glutamatergic neuron
8
islet of Langerhans
8
lower leg skin
8
lymphocyte
8
osteoblast
8
pancreatic delta cell
8
skeletal muscle myoblast
8
skin fibroblast
7
HepG2
7
SK-N-DZ
7
SK-N-SH
7
ascending aorta
7
bronchial epithelial cell
chorion membrane
7
embryonic stem cell
7
erythroblast
7
esophagus
7
eye
7
kidney tubule cell
7
neutrophil
7
omental fat pad
7
right atrium auricular region
7
trophoblast
6
22Rv1
6
Ammon's horn
6
SGBS preadipocytes
6
T-cell
6
WI38
6
angular gyrus
6
cerebellum
6
cingulate gyrus
6
colonic mucosa
6
dendritic cell
6
duodenal mucosa
6
endodermal cell
6
endometrium adenocarcinoma
6
endothelial cell of hepatic sinusoid
6
fibroblast of breast
6
foreskin melanocyte
6
frontal cortex
6
gastroesophageal sphincter
6
glomerular visceral epithelial cell
6
immortal human breast epithelial cell line cell
6
limb
6
luminal epithelial cell of mammary gland
6
naive thymus-derived CD4-positive, alpha-beta T cell
6
parathyroid adenoma
6
temporal lobe
6
thoracic aorta
6
tibial artery
6
tongue
5
HAP-1
5
HCT116
5
HEK293
5
HT-29
5
HUES8
5
IMR-90
5
LNCaP clone FGC
5
MM.1S
5
NAMALWA cell
5
OCI-LY7
5
PC-9
5
T47D
5
bipolar neuron
5
chondrocyte
5
choroid plexus epithelial cell
5
cortical cell of adrenal gland
5
gabaergic neuron
5
globus pallidus
5
glomerular endothelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
kidney glomerular epithelial cell
5
mammary epithelial cell
5
memory B cell
5
mucosa of rectum
5
myoepithelial cell of mammary gland
5
naive T cell
5
right renal cortex interstitium
5
substantia nigra
5
urinary bladder
4
A172
4
A673
4
ACHN
4
Brodmann (1909) area 46
4
CD1c-positive myeloid dendritic cell
4
CD4-positive helper T cell
4
CMK
4
Caki2
4
CyT49
Life stage
3
embryonic
Date released
2
September, 2022
1
February, 2021
1
June, 2020
1
March, 2020
1
May, 2021
Software used
2
r
1
abc
1
encode-ccres
1
macs
1
nospecificsoft_customcode
Lab
5
AMP-T2D consortium
1
Jesse Engreitz, Stanford University
Project
6
AMP
RFA
6
AMP
biosample_term_name!
chorion membrane
heart
Showing 6 of 6 results
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Download
FileSet
DSR507CRE
released
Annotation file set
: Candidate regulatory elements for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR401CTI
released
Annotation file set
: Target gene predictions for BSS01263 mesendoderm from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR832JXZ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE mesendoderm
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR932LQZ
released
Annotation file set
: enhancer-gene predicton of H1_BMP4_Derived_Mesendoderm_Cultured_Cells-Roadmap from Broad ABC data
Lab:
Jesse Engreitz, Stanford University
Project:
AMP
FileSet
DSR746BZC
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC derived mesendodermal cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR579JEW
released
Annotation file set
: A target gene prediction annotation in Human Mesendoderm of GSE86189 pCHi-C
Lab:
AMP-T2D consortium
Project:
AMP