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Schema
Citing CMDGA
Clear Filters
Annotation type
9
gene expression
7
target gene predictions
4
binding sites
2
accessible chromatin
2
candidate regulatory elements
2
histone modifications
1
chromatin state
1
eQTL
Annotation Category
4
cis-regulatory elements
Annotation type Category
snATAC-seq
3
DNase-seq
2
ChIP-seq
1
ATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
4
primary cell
1
tissue
Biosample term
27
common myeloid progenitor, CD34-positive
17
monocyte
16
B cell
14
CD4-positive, alpha-beta memory T cell
11
foreskin keratinocyte
9
CD8-positive, alpha-beta T cell
9
T-helper 1 cell
9
regulatory T cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
endothelial cell of umbilical vein
8
hepatocyte
8
trophoblast cell
7
T-helper 17 cell
7
T-helper 2 cell
7
foreskin fibroblast
7
mononuclear cell
7
natural killer cell
7
neurosphere
7
osteoblast
6
dermis blood vessel endothelial cell
6
fibroblast of lung
6
skeletal muscle myoblast
5
bronchial epithelial cell
5
kidney tubule cell
4
T cell
4
T-cell
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
kidney glomerular epithelial cell
4
mammary epithelial cell
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
renal cortical epithelial cell
4
retinal pigment epithelial cell
3
cardiac fibroblast
3
CD1c-positive myeloid dendritic cell
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
epithelial cell of proximal tubule
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hepatic stellate cell
3
iris pigment epithelial cell
3
keratinocyte
3
kidney epithelial cell
3
lung microvascular endothelial cell
3
mammary gland epithelial cell
3
naive T cell
3
non-pigmented ciliary epithelial cell
3
pulmonary artery endothelial cell
3
skeletal muscle cell
3
skin fibroblast
3
smooth muscle cell of the brain vasculature
2
T follicular helper cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
astrocyte of the spinal cord
2
bone marrow cell
2
brain pericyte
2
central memory CD8-positive, alpha-beta T cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of esophagus
2
fibroblast of gingiva
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
gamma-delta T cell
2
kidney capillary endothelial cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
pancreatic beta cell
2
pancreatic ductal cell
2
skeletal muscle satellite cell
2
stromal cell of bone marrow
1
B-Lymphocytes
1
B-lymphocyte
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
amnion mesenchymal stem cell
1
amniotic epithelial cell
1
amniotic stem cell
1
aortic adventitial fibroblast
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
erythroid cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
immature natural killer cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of mammary gland
1
mammary stem cell
1
mesenchymal stem cell
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
neoplastic cell
1
neuron
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pericyte cell
1
peripheral blood stem cell
1
plasma cell
1
plasmacytoid dendritic cell
1
preadipocyte
1
primordial germ cell
1
pulmonary interstitial fibroblast
1
regular cardiac myocyte
1
renal epithelial cell
1
renal intercalated cell
1
renal principal cell
1
somatic gonadal cell
1
tracheal epithelial cell
Organ
3
connective tissue
3
mammary gland
1
epithelium
Life stage
2
unknown
1
adult
Date released
1
August, 2021
1
February, 2021
1
June, 2020
1
September, 2022
Software used
2
macs
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
1
Katalin Susztak, Upenn
Project
4
AMP
RFA
3
AMP
1
AMP2
annotation_type_category!
snATAC-seq
Showing 4 of 4 results
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Download
FileSet
DSR025HFM
released
Annotation file set
: Candidate regulatory elements for BSS00343 fibroblast of mammary gland from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR349CZE
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of mammary gland
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR493PXL
released
Annotation file set
: Accessible chromatin from Katalin Susztak 75kidney Project of Endothelial cells
Lab:
Katalin Susztak, Upenn
Project:
AMP
FileSet
DSR284SDQ
released
Annotation file set
: Accessible chromatin annotation for Breast HMF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP