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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
target gene predictions
4
candidate regulatory elements
1
accessible chromatin
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
DNase-seq
4
ChIP-seq
4
snATAC-seq
3
ATAC-seq
Available data
5
bed bed3+
File set status
5
released
Genome assembly (visualization)
5
hg19
Organism
5
Homo sapiens
Biosample type
5
in vitro differentiated cells
Biosample term
43
stomach
41
heart
34
muscle of arm
33
lung
32
kidney
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
18
left kidney
16
B cell
16
spinal cord
16
spleen
14
CD4-positive, alpha-beta memory T cell
14
liver
13
heart left ventricle
12
foreskin keratinocyte
11
sigmoid colon
10
MCF-7
10
trophoblast cell
9
gastrocnemius medialis
9
ovary
9
pancreas
9
thyroid gland
9
transverse colon
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
K562
8
Peyer's patch
8
body of pancreas
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
psoas muscle
8
retina
8
testis
8
tibial nerve
8
upper lobe of left lung
7
H9
7
T-helper 1 cell
7
adipose tissue
7
cardiac muscle cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
mononuclear cell
7
natural killer cell
7
neurosphere
7
regulatory T cell
7
right renal pelvis
6
breast epithelium
6
dermis blood vessel endothelial cell
6
esophagus muscularis mucosa
6
fibroblast of lung
6
layer of hippocampus
6
lower leg skin
6
omental fat pad
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
5
HeLa-S3
5
SK-N-DZ
5
T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
WI38
5
adipocyte
5
ascending aorta
5
bronchial epithelial cell
5
epithelial cell of prostate
5
eye
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
gastroesophageal sphincter
5
hepatocyte
5
kidney tubule cell
5
mesenchymal stem cell
5
neural progenitor cell
5
osteoblast
5
parathyroid adenoma
5
prostate gland
5
right atrium auricular region
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
tibial artery
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
coronary artery
4
duodenal mucosa
4
endodermal cell
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
limb
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
retinal pigment epithelial cell
4
skin fibroblast
4
stomach smooth muscle
4
thoracic aorta
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
3
HT-29
3
HUES6
3
HepG2
3
IMR-90
3
KBM-7
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-3
3
PC-9
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
SJCRH30
3
SJSA1
3
SK-N-MC
3
SW480
3
T47D
3
WERI-Rb-1
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
bipolar neuron
3
brain microvascular endothelial cell
3
brain pericyte
3
cardiac fibroblast
Organ
5
connective tissue
Life stage
2
adult
2
unknown
Date released
2
February, 2021
2
September, 2022
1
June, 2020
Software used
2
encode-ccres
2
r
1
macs
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
esophagus
Showing 5 of 5 results
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Download
FileSet
DSR611GAA
released
Annotation file set
: Candidate regulatory elements for BSS00039 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR854ZLT
released
Annotation file set
: Candidate regulatory elements for BSS00038 adipocyte from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR810TFD
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR462QHF
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE adipocyte
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073DMC
released
Annotation file set
: Accessible chromatin annotation for Adipocyte Adipocytes from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP