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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
40
target gene predictions
24
gene expression
3
binding sites
3
candidate regulatory elements
3
chromatin state
2
accessible chromatin
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
5
DNase-seq
3
ChIP-seq
Available data
5
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
1
GRCh38
Organism
5
Homo sapiens
Biosample type
3
primary cell
2
cell line
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
20
pigmented layer of retina
19
B cell
18
left kidney
18
monocyte
17
liver
17
spleen
16
spinal cord
15
neural progenitor cell
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
12
foreskin keratinocyte
11
CD8-positive, alpha-beta T cell
11
sigmoid colon
10
MCF-7
10
hepatocyte
10
natural killer cell
10
pancreas
10
regulatory T cell
10
retinal pigment epithelial cell
10
trophoblast cell
9
T-helper 1 cell
9
adipocyte
9
adipose tissue
9
gastrocnemius medialis
9
ovary
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
K562
8
Peyer's patch
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
psoas muscle
8
testis
8
upper lobe of left lung
7
H9
7
T cell
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
mesenchymal stem cell
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
right renal pelvis
6
SGBS preadipocytes
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
embryonic stem cell
6
endothelial cell
6
esophagus muscularis mucosa
6
fibroblast of lung
6
islet of Langerhans
6
layer of hippocampus
6
lower leg skin
6
pancreatic beta cell
6
pancreatic ductal cell
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
chondrocyte
5
epithelial cell of prostate
5
eye
5
fibroblast of cardiac tissue
5
foreskin melanocyte
5
gastroesophageal sphincter
5
glomerular visceral epithelial cell
5
kidney tubule cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic alpha cell
5
parathyroid adenoma
5
prostate gland
5
smooth muscle cell
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
endothelial cell of hepatic sinusoid
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
glutamatergic neuron
4
kidney glomerular epithelial cell
4
limb
4
macrophage
4
mammary epithelial cell
4
mammary gland epithelial cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neural cell
4
neutrophil
4
pancreatic acinar cell
4
pancreatic delta cell
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
skeletal muscle satellite cell
4
skin fibroblast
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
3
HT-29
3
HUES6
3
IMR-90
3
KBM-7
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
M059J
3
MCF 10A
Organ
3
epithelium
3
kidney
2
embryo
Life stage
2
unknown
1
embryonic
Date released
2
September, 2022
1
February, 2021
1
January, 2020
1
June, 2020
Software used
2
macs
2
r
1
encode-ccres
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
award.project!
ENCODE
Showing 5 of 5 results
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Download
FileSet
DSR702NFK
released
Annotation file set
: Candidate regulatory elements for BSS00478 H1-hESC from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR691IGQ
released
Annotation file set
: Candidate regulatory elements for BSS00310 epithelial cell of proximal tubule from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR711XKR
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE epithelial cell of proximal tubule
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR165RXW
released
Annotation file set
: Accessible chromatin annotation for Pluripotent stem cell hESC H1 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR184YBQ
released
Annotation file set
: Accessible chromatin annotation of kidney epithelial cell of proximal tubule from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP