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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
target gene predictions
3
candidate regulatory elements
3
chromatin state
2
eQTL
2
histone modifications
1
accessible chromatin
1
binding sites
1
gene expression
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
DNase-seq
3
ChIP-seq
Available data
4
bed bed3+
File set status
4
released
Genome assembly (visualization)
4
hg19
Organism
4
Homo sapiens
Biosample type
3
tissue
1
cell line
Biosample term
23
retina
20
pigmented layer of retina
19
A549
19
B cell
19
endothelial cell
19
fibroblast
18
monocyte
16
macrophage
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
pericyte cell
12
kidney
11
T cell
11
hematopoietic multipotent progenitor cell
11
smooth muscle cell
10
adipocyte
10
hepatocyte
10
natural killer cell
10
neural progenitor cell
10
retinal pigment epithelial cell
9
CD4-positive, alpha-beta memory T cell
9
stomach
8
EndoC_BH1
8
adipose tissue
8
astrocyte
8
liver
8
pancreatic beta cell
8
pancreatic ductal cell
8
regulatory T cell
7
CD8-positive, alpha-beta memory T cell
7
K562
7
adrenal gland
7
islet of Langerhans
7
pancreas
7
pancreatic acinar cell
7
pancreatic alpha cell
7
spleen
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of lymphatic vessel
6
fibroblast of cardiac tissue
6
glutamatergic neuron
6
heart
6
heart left ventricle
6
mononuclear cell
6
osteoblast
6
sigmoid colon
6
skeletal muscle satellite cell
6
tibial nerve
5
CD8-positive, alpha-beta T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
caudate nucleus
5
chondrocyte
5
coronary artery
5
erythroblast
5
foreskin keratinocyte
5
gastrocnemius medialis
5
hepatic stellate cell
5
inhibitory neuron
5
mammary gland epithelial cell
5
pancreatic delta cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle fiber
5
thyroid gland
5
tibial artery
5
transverse colon
4
CD14-positive monocyte
4
Peyer's patch
4
body of pancreas
4
colon epithelial cell
4
endocardial cell
4
endocrine pancreas
4
endothelial cell of umbilical vein
4
frontal cortex
4
glomerular visceral epithelial cell
4
keratinocyte
4
kidney tubule cell
4
mast cell
4
memory B cell
4
mesenchymal stem cell
4
omental fat pad
4
ovary
4
pancreatic stellate cell
4
skeletal muscle myoblast
4
small intestine
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
HeLa-S3
3
HepG2
3
NAMALWA cell
3
SK-N-DZ
3
ascending aorta
3
breast epithelium
3
bronchial epithelial cell
3
cerebellum
3
choroid plexus epithelial cell
3
cortical cell of adrenal gland
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
heart right ventricle
3
immortal human breast epithelial cell line cell
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
midbrain
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuronal stem cell
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
skeletal muscle tissue
3
skin fibroblast
3
superior temporal gyrus
3
testis
3
thoracic aorta
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
22Rv1
2
A172
2
ACHN
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H4
2
HAP-1
2
HL-60
2
HT-29
2
HuH-7
2
KARPAS-422 cell
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
M059J
2
MG63
2
MM.1S
2
Muller cell
2
NCI-H226 cell
2
NT2-D1 cell
2
OCI-LY7
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SK-N-SH
2
SW480
2
T follicular helper cell
Organ
2
lung
1
extraembryonic component
1
penis
1
placenta
Life stage
embryonic
1
adult
1
child
1
newborn
Date released
3
September, 2022
1
June, 2020
Software used
encode-ccres
3
r
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
relevant_life_stage!
embryonic
software_used.software.name!
encode-ccres
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR934KAC
released
Annotation file set
: Candidate regulatory elements for BSS01201 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR655KYY
released
Annotation file set
: Candidate regulatory elements for BSS01190 lung from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR589YDI
released
Annotation file set
: Candidate regulatory elements for BSS00275 EH from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR953MXQ
released
Annotation file set
: Accessible chromatin annotation for Placenta Placenta from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP