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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
binding sites
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
histone modifications
1
target gene predictions
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
large intestine
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
25
B cell
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
20
pigmented layer of retina
19
endothelial cell
19
fibroblast
18
left kidney
18
monocyte
17
liver
17
spleen
16
macrophage
16
spinal cord
15
neural progenitor cell
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
13
excitatory neuron
13
natural killer cell
13
pericyte cell
13
smooth muscle cell
12
CD8-positive, alpha-beta T cell
12
adipocyte
12
foreskin keratinocyte
12
hepatocyte
11
T cell
11
retinal pigment epithelial cell
11
sigmoid colon
10
MCF-7
10
astrocyte
10
pancreas
10
regulatory T cell
10
trophoblast cell
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
adipose tissue
9
gastrocnemius medialis
9
ovary
9
thyroid gland
9
tibial nerve
9
transverse colon
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
K562
8
Peyer's patch
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
pancreatic beta cell
8
pancreatic ductal cell
8
psoas muscle
8
testis
8
upper lobe of left lung
7
H9
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
fibroblast of cardiac tissue
7
heart right ventricle
7
islet of Langerhans
7
left renal cortex interstitium
7
left renal pelvis
7
mesenchymal stem cell
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right renal pelvis
7
skeletal muscle satellite cell
6
SGBS preadipocytes
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of lymphatic vessel
6
esophagus muscularis mucosa
6
fibroblast of lung
6
glutamatergic neuron
6
layer of hippocampus
6
lower leg skin
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
chondrocyte
5
epithelial cell of prostate
5
erythroblast
5
eye
5
foreskin melanocyte
5
gastroesophageal sphincter
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
keratinocyte
5
kidney tubule cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neuronal stem cell
5
pancreatic delta cell
5
parathyroid adenoma
5
prostate gland
5
skeletal muscle fiber
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
colon epithelial cell
4
colonic mucosa
4
duodenal mucosa
4
endocardial cell
4
endodermal cell
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
kidney glomerular epithelial cell
4
limb
4
mammary epithelial cell
4
mast cell
4
memory B cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neural cell
4
neuron
4
neutrophil
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
type II pneumocyte
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
Organ
3
lymph node
Life stage
2
unknown
Date released
1
February, 2021
1
June, 2020
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
month_released!
March, 2023
Showing 3 of 3 results
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Download
FileSet
DSR131GUL
released
Annotation file set
: Candidate regulatory elements for BSS00428 GM12865 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR591REN
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE GM12865
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR245HPS
released
Annotation file set
: Accessible chromatin annotation for Blood GM12865 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP