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Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
Organism
3
Homo sapiens
Biosample type
primary cell
3
in vitro differentiated cells
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
large intestine
28
muscle of back
27
placenta
26
left lung
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
20
pigmented layer of retina
18
left kidney
17
liver
17
spleen
16
spinal cord
15
neural progenitor cell
14
heart left ventricle
11
sigmoid colon
10
MCF-7
10
pancreas
9
adipose tissue
9
gastrocnemius medialis
9
ovary
9
thyroid gland
9
tibial nerve
9
transverse colon
8
EndoC_BH1
8
K562
8
Peyer's patch
8
adipocyte
8
body of pancreas
8
chorionic villus
8
muscle of trunk
8
psoas muscle
8
testis
8
upper lobe of left lung
7
H9
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
heart right ventricle
7
left renal cortex interstitium
7
left renal pelvis
7
omental fat pad
7
right renal pelvis
6
SGBS preadipocytes
6
breast epithelium
6
coronary artery
6
embryonic stem cell
6
esophagus muscularis mucosa
6
islet of Langerhans
6
layer of hippocampus
6
lower leg skin
6
retinal pigment epithelial cell
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
WI38
5
ascending aorta
5
cardiac muscle cell
5
chondrocyte
5
eye
5
gastroesophageal sphincter
5
parathyroid adenoma
5
prostate gland
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
cingulate gyrus
4
colonic mucosa
4
duodenal mucosa
4
endodermal cell
4
esophagus
4
frontal cortex
4
globus pallidus
4
limb
4
mesenchymal stem cell
4
mesodermal cell
4
mucosa of rectum
4
muscle layer of colon
4
muscle layer of duodenum
4
putamen
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
urinary bladder
4
uterus
4
vagina
3
A172
3
ACHN
3
CMK
3
Caki2
3
Daoy
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
3
HT-29
3
HUES6
3
IMR-90
3
KBM-7
3
L1-S8
3
LHCN-M2
3
LNCAP
3
LNCaP clone FGC
3
M059J
3
MCF 10A
3
MG63
3
MM.1S
3
NAMALWA cell
3
OCI-LY7
3
PC-3
3
PC-9
3
RCC 7860
3
RPMI7951
3
RPMI8226
3
RWPE1
3
SJCRH30
3
SJSA1
3
SK-N-MC
3
SW480
3
T47D
3
WERI-Rb-1
3
bipolar neuron
3
cerebellar cortex
3
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
3
left cardiac atrium
3
medulla oblongata
3
mesendoderm
3
midbrain
3
middle frontal gyrus
3
neural cell
3
neuronal stem cell
3
occipital lobe
3
pons
3
superior temporal gyrus
3
suprapubic skin
3
umbilical cord
2
A673
2
ACC112
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
C4-2B
2
Caco-2 cell
2
DND-41
2
DOHH2
2
EH
2
EL
2
ELF-1
2
ELR
2
G401
2
GM03348
2
GM08714
2
GM12875
2
GM13976
2
GM13977
2
GM18507
Life stage
2
adult
Date released
1
February, 2021
1
June, 2020
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
GM04503
biosample_type!
primary cell
Showing 3 of 3 results
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Download
FileSet
DSR044VBZ
released
Annotation file set
: Candidate regulatory elements for BSS00112 bipolar neuron from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR885OYQ
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE bipolar neuron
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR320JCV
released
Annotation file set
: Accessible chromatin annotation for Neural Bipolar spindle neurons from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP