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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
2
accessible chromatin
2
candidate regulatory elements
2
target gene predictions
1
chromatin state
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
1
snATAC-seq
Available data
4
bed bed3+
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
1
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
27
common myeloid progenitor, CD34-positive
20
B cell
17
monocyte
16
fibroblast
14
CD4-positive, alpha-beta memory T cell
14
endothelial cell
12
excitatory neuron
11
foreskin keratinocyte
11
macrophage
11
pericyte cell
10
CD8-positive, alpha-beta T cell
10
T cell
10
astrocyte
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
hepatocyte
9
regulatory T cell
9
smooth muscle cell
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
endothelial cell of umbilical vein
8
natural killer cell
8
trophoblast cell
7
T-helper 17 cell
7
T-helper 2 cell
7
foreskin fibroblast
7
mononuclear cell
7
neurosphere
7
osteoblast
7
skeletal muscle satellite cell
6
dermis blood vessel endothelial cell
6
endothelial cell of hepatic sinusoid
6
fibroblast of lung
6
glutamatergic neuron
6
pancreatic beta cell
6
skeletal muscle myoblast
5
bronchial epithelial cell
5
erythroblast
5
fibroblast of cardiac tissue
5
inhibitory neuron
5
keratinocyte
5
kidney tubule cell
5
pancreatic acinar cell
5
pancreatic alpha cell
5
pancreatic ductal cell
5
retinal pigment epithelial cell
5
skeletal muscle fiber
4
T-cell
4
epithelial cell of prostate
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney glomerular epithelial cell
4
mammary epithelial cell
4
mammary gland epithelial cell
4
myoepithelial cell of mammary gland
4
naive thymus-derived CD4-positive, alpha-beta T cell
4
neutrophil
4
peripheral blood mononuclear cell
4
renal cortical epithelial cell
4
skin fibroblast
4
type II pneumocyte
3
cardiac fibroblast
3
CD1c-positive myeloid dendritic cell
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
colon epithelial cell
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
epithelial cell of proximal tubule
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
gabaergic neuron
3
iris pigment epithelial cell
3
kidney epithelial cell
3
luminal epithelial cell of mammary gland
3
lung microvascular endothelial cell
3
memory B cell
3
mesenchymal stem cell
3
naive T cell
3
non-pigmented ciliary epithelial cell
3
pancreatic delta cell
3
pulmonary artery endothelial cell
3
skeletal muscle cell
3
smooth muscle cell of the brain vasculature
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Muller cell
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adipocyte
2
aortic endothelial cell
2
astrocyte of the spinal cord
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
fibroblast of gingiva
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
gamma-delta T cell
2
glial cell
2
kidney capillary endothelial cell
2
leukocyte
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
naive B cell
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
neuron
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
plasma cell
2
schwann cell
2
smooth muscle cell of the esophagus
2
stromal cell of bone marrow
1
B-Lymphocytes
1
B-lymphocyte
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
alveolar macrophage
1
amnion mesenchymal stem cell
1
amniotic epithelial cell
1
amniotic stem cell
1
aortic adventitial fibroblast
1
basal cell of epidermis
1
cardiac endothelial cell
1
cholangiocyte
1
chromaffin cell of adrenal gland
1
ciliated epithelial cell
1
colon goblet cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
eccrine cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
enterochromaffin-like cell
1
enterocyte of epithelium of small intestine
1
enteroendocrine cell
1
epidermal melanocyte
1
epithelial cell of amnion
1
erythrocyte
1
erythroid cell
1
extravillous trophoblast
1
fetal thymocyte
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
foveolar cell of stomach
1
gastric goblet cell
1
goblet cell
1
granular cell of epidermis
1
hepatoblast
1
immature natural killer cell
1
intestinal tuft cell
1
islet of Langerhans
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
lung neuroendocrine cell
1
luteal cell
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
Organ
3
connective tissue
Life stage
2
unknown
Date released
1
February, 2021
1
June, 2020
1
November, 2021
1
September, 2022
Software used
2
macs
1
encode-ccres
1
r
Lab
3
AMP-T2D consortium
1
Bing Ren, UCSD
Project
3
AMP
1
ENCODE
RFA
3
AMP
1
ENCODE3
month_released!
January, 2021
Showing 4 of 4 results
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Download
FileSet
DSR197PKJ
released
Annotation file set
: Candidate regulatory elements for BSS00344 fibroblast of peridontal ligament from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR542FSB
released
Annotation file set
: Accessible chromatin annotation of Melanocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR534TSK
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE fibroblast of peridontal ligament
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR585DKC
released
Annotation file set
: Accessible chromatin annotation for Others HPdLF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP