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Schema
Citing CMDGA
Clear Filters
Annotation type
2
candidate regulatory elements
1
accessible chromatin
1
chromatin state
1
target gene predictions
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
DNase-seq
2
ChIP-seq
Available data
3
bed bed3+
1
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
primary cell
Biosample term
27
common myeloid progenitor, CD34-positive
18
monocyte
17
B cell
14
CD4-positive, alpha-beta memory T cell
11
foreskin keratinocyte
10
CD8-positive, alpha-beta T cell
10
regulatory T cell
9
T-helper 1 cell
9
natural killer cell
8
CD14-positive monocyte
8
CD4-positive, alpha-beta T cell
8
CD8-positive, alpha-beta memory T cell
8
endothelial cell of umbilical vein
8
hepatocyte
8
trophoblast cell
7
T-helper 17 cell
7
T-helper 2 cell
7
foreskin fibroblast
7
mononuclear cell
7
neurosphere
7
osteoblast
6
T cell
6
dermis blood vessel endothelial cell
6
fibroblast of lung
6
pancreatic beta cell
6
skeletal muscle myoblast
5
bronchial epithelial cell
5
endothelial cell
5
kidney tubule cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
pancreatic alpha cell
4
T-cell
4
endothelial cell of hepatic sinusoid
4
epithelial cell of prostate
4
fibroblast of breast
4
fibroblast of dermis
4
foreskin melanocyte
4
glomerular endothelial cell
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
kidney glomerular epithelial cell
4
mammary epithelial cell
4
myoepithelial cell of mammary gland
4
neutrophil
4
pancreatic delta cell
4
pancreatic ductal cell
4
peripheral blood mononuclear cell
4
renal cortical epithelial cell
4
retinal pigment epithelial cell
4
skeletal muscle satellite cell
3
cardiac fibroblast
3
CD1c-positive myeloid dendritic cell
3
astrocyte
3
astrocyte of the cerebellum
3
astrocyte of the hippocampus
3
brain microvascular endothelial cell
3
cardiac fibroblast
3
cardiac muscle cell
3
choroid plexus epithelial cell
3
epithelial cell of proximal tubule
3
fibroblast of cardiac tissue
3
fibroblast of mammary gland
3
fibroblast of peridontal ligament
3
fibroblast of pulmonary artery
3
fibroblast of villous mesenchyme
3
hepatic stellate cell
3
iris pigment epithelial cell
3
keratinocyte
3
kidney epithelial cell
3
lung microvascular endothelial cell
3
macrophage
3
mammary gland epithelial cell
3
memory B cell
3
mesenchymal stem cell
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
non-pigmented ciliary epithelial cell
3
pancreatic acinar cell
3
pulmonary artery endothelial cell
3
skeletal muscle cell
3
skin fibroblast
3
smooth muscle cell
3
smooth muscle cell of the brain vasculature
2
T follicular helper cell
2
acute myeloid leukemia cell
2
aortic endothelial cell
2
astrocyte of the spinal cord
2
bone marrow cell
2
brain pericyte
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
dermis lymphatic vessel endothelial cell
2
dermis microvascular lymphatic vessel endothelial cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
epithelial cell of esophagus
2
extracellular matrix secreting cell
2
fibroblast
2
fibroblast of gingiva
2
fibroblast of the aortic adventitia
2
fibroblast of the conjunctiva
2
gamma-delta T cell
2
kidney capillary endothelial cell
2
leukocyte
2
mature natural killer cell
2
memory T cell
2
memory regulatory T cell
2
naive regulatory T cell
2
pancreatic polypeptide-secreting cell
2
pancreatic stellate cell
2
pericyte cell
2
plasmacytoid dendritic cell
2
skeletal muscle fiber
2
stromal cell of bone marrow
2
type I muscle cell
2
type II muscle cell
1
B-Lymphocytes
1
B-lymphocyte
1
CD4-Positive T-Lymphocytes
1
CD4-positive helper T cell
1
CD4-positive, CD25-positive, alpha-beta regulatory T cell
1
Glioblastoma
1
Ishikawa
1
Th1 cell
1
Th17 cell
1
Th2 cell
1
activated CD4-positive, alpha-beta T cell
1
activated CD8-positive, alpha-beta T cell
1
adipocyte
1
amnion mesenchymal stem cell
1
amniotic epithelial cell
1
amniotic stem cell
1
aortic adventitial fibroblast
1
basal cell
1
ciliated cell
1
club cell
1
conventional dendritic cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
effector memory CD4-positive, alpha-beta T cell
1
endothelial cell of artery
1
endothelial cell of lymphatic vessel
1
epidermal melanocyte
1
epithelial cell of amnion
1
erythrocyte
1
erythroid cell
1
fibroblast of skin of abdomen
1
fibroblast of skin of back
1
fibroblast of skin of right quadriceps
1
gabaergic neuron
1
glial cell
1
immature natural killer cell
1
kidney distal convoluted tubule epithelial cell
1
kidney interstitial cell
1
kidney loop of Henle epithelial cell
1
kidney proximal convoluted tubule epithelial cell
1
kidney proximal convoluted tubule epithelial cell & kidney proximal straight tubule epithelial cell
1
kidney proximal straight tubule epithelial cell
1
luminal epithelial cell of mammary gland
1
lymphocyte(CL:0000542) and natural killer cell(CL:0000623)
1
macrophage(CL:0000235) and neutrophil(CL:0000775)
1
mammary stem cell
1
megakaryocyte
1
microglial cell/astrocyte
1
myeloid dendritic cell
1
myofibroblast cell
1
natural killer cell mediated cytotoxicity
1
neoplastic cell
1
neural cell
1
neuroendocrine cell
1
neuron
1
non-classical monocyte
1
non-neuronal cell
1
oligodendrocyte
1
pancreatic endothelial cell
1
pancreatic immune cell
1
peripheral blood stem cell
1
plasma cell
1
preadipocyte
1
primordial germ cell
1
proximal tubule cells with injury markers
1
pulmonary interstitial fibroblast
1
regular cardiac myocyte
1
renal epithelial cell
1
renal intercalated cell
1
renal principal cell
1
somatic gonadal cell
1
stellate neuron
1
tracheal epithelial cell
1
type I pneumocyte
1
type II pneumocyte
Organ
3
vasculature
Life stage
2
unknown
Date released
1
February, 2021
1
January, 2020
1
September, 2022
Software used
1
encode-ccres
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_type!
tissue
month_released!
November, 2021
Showing 3 of 3 results
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Download
FileSet
DSR712BUP
released
Annotation file set
: Candidate regulatory elements for BSS01606 smooth muscle cell of the brain vasculature from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR828HMS
released
Annotation file set
: Registry of candidate cis-Regulatory Elements (cCREs) derived from ENCODE smooth muscle cell of the brain vasculature
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR249BQC
released
Annotation file set
: Accessible chromatin annotation of brain vascular smooth muscle cell from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP