Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
target gene predictions
1
variant allelic effects
0
candidate regulatory elements
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
43
stomach
42
heart
39
kidney
34
muscle of arm
33
lung
31
brain
30
small intestine
29
adrenal gland
29
muscle of leg
29
retina
28
muscle of back
27
common myeloid progenitor, CD34-positive
27
placenta
26
left lung
25
B cell
23
right lung
22
A549
21
renal cortex interstitium
21
renal pelvis
21
right kidney
21
thymus
20
hematopoietic multipotent progenitor cell
20
pigmented layer of retina
19
endothelial cell
19
fibroblast
18
left kidney
18
monocyte
17
liver
17
spleen
16
macrophage
16
spinal cord
15
neural progenitor cell
14
CD4-positive, alpha-beta memory T cell
14
heart left ventricle
13
excitatory neuron
13
natural killer cell
13
pericyte cell
13
smooth muscle cell
12
CD8-positive, alpha-beta T cell
12
adipocyte
12
foreskin keratinocyte
12
hepatocyte
11
T cell
11
retinal pigment epithelial cell
10
MCF-7
10
astrocyte
10
pancreas
10
regulatory T cell
10
trophoblast cell
9
CD4-positive, alpha-beta T cell
9
T-helper 1 cell
9
adipose tissue
9
gastrocnemius medialis
9
ovary
9
thyroid gland
9
tibial nerve
8
CD14-positive monocyte
8
CD8-positive, alpha-beta memory T cell
8
EndoC_BH1
8
K562
8
Peyer's patch
8
body of pancreas
8
cardiac muscle cell
8
chorionic villus
8
endothelial cell of umbilical vein
8
foreskin fibroblast
8
muscle of trunk
8
pancreatic beta cell
8
pancreatic ductal cell
8
psoas muscle
8
testis
8
upper lobe of left lung
7
H9
7
T-helper 17 cell
7
T-helper 2 cell
7
caudate nucleus
7
endocrine pancreas
7
esophagus squamous epithelium
7
fibroblast of cardiac tissue
7
heart right ventricle
7
islet of Langerhans
7
left renal cortex interstitium
7
left renal pelvis
7
mesenchymal stem cell
7
mononuclear cell
7
neurosphere
7
omental fat pad
7
osteoblast
7
pancreatic acinar cell
7
pancreatic alpha cell
7
right renal pelvis
7
skeletal muscle satellite cell
6
SGBS preadipocytes
6
breast epithelium
6
coronary artery
6
dermis blood vessel endothelial cell
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
endothelial cell of lymphatic vessel
6
esophagus muscularis mucosa
6
fibroblast of lung
6
glutamatergic neuron
6
layer of hippocampus
6
lower leg skin
6
right atrium auricular region
6
right renal cortex interstitium
6
skeletal muscle myoblast
6
skeletal muscle tissue
6
tibial artery
5
HeLa-S3
5
SK-N-DZ
5
WI38
5
ascending aorta
5
bronchial epithelial cell
5
chondrocyte
5
epithelial cell of prostate
5
erythroblast
5
eye
5
foreskin melanocyte
5
gastroesophageal sphincter
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
keratinocyte
5
kidney tubule cell
5
mammary gland epithelial cell
5
naive thymus-derived CD4-positive, alpha-beta T cell
5
neuronal stem cell
5
pancreatic delta cell
5
parathyroid adenoma
5
prostate gland
5
skeletal muscle fiber
5
skin fibroblast
5
subcutaneous abdominal adipose tissue
5
substantia nigra
5
temporal lobe
5
thoracic aorta
5
tongue
5
trophoblast
4
22Rv1
4
Ammon's horn
4
HEK293
4
HepG2
4
SK-N-SH
4
T-cell
4
angular gyrus
4
aorta
4
cerebellum
4
chorion membrane
4
choroid plexus epithelial cell
4
cingulate gyrus
4
duodenal mucosa
4
endocardial cell
4
endodermal cell
4
esophagus
4
fibroblast of breast
4
fibroblast of dermis
4
frontal cortex
4
globus pallidus
4
glomerular endothelial cell
4
kidney glomerular epithelial cell
4
limb
4
mammary epithelial cell
4
mast cell
4
memory B cell
4
mesodermal cell
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neural cell
4
neuron
4
neutrophil
4
pancreatic stellate cell
4
peripheral blood mononuclear cell
4
putamen
4
renal cortical epithelial cell
4
stomach smooth muscle
4
subcutaneous adipose tissue
4
type II pneumocyte
4
urinary bladder
4
uterus
4
vagina
3
cardiac fibroblast
3
A172
3
ACHN
3
CD1c-positive myeloid dendritic cell
3
CMK
3
Caki2
3
Daoy
3
GM04503
3
GM04504
3
GM06990
3
GM10248
3
GM10266
3
GM12864
3
GM12865
3
GM12878
3
GM23248
3
H4
3
HAP-1
3
HL-60
Organ
4
epithelium
4
lung
Date released
3
November, 2021
1
April, 2020
Software used
3
macs
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
3
ENCODE3
1
LungMap2
biosample_term_name!
Loucy
organ_slims!
large intestine
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR731YZV
released
Annotation file set
: ATAC-seq peaks in AT2 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR314DTK
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR413LRE
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR002AWQ
released
Annotation file set
: Accessible chromatin annotation of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE