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Schema
Citing CMDGA
Clear Filters
Annotation type
18
candidate regulatory elements
target gene predictions
6
accessible chromatin
3
binding sites
2
histone modifications
1
gene expression
0
chromatin state
Annotation Category
6
cis-regulatory elements
Annotation type Category
6
ATAC-seq
Available data
bed bed9
5
bed bed3+
5
bigBed bed9
File set status
6
released
Genome assembly (visualization)
5
hg19
Organism
6
Homo sapiens
Biosample type
6
in vitro differentiated cells
Biosample term
23
retina
20
pigmented layer of retina
18
monocyte
16
endothelial cell
16
fibroblast
13
excitatory neuron
13
macrophage
10
adipocyte
10
islet of Langerhans
10
kidney
10
neural progenitor cell
10
pericyte cell
9
retinal pigment epithelial cell
9
smooth muscle cell
8
B cell
8
EndoC_BH1
8
astrocyte
8
hepatocyte
8
pancreatic beta cell
8
pancreatic ductal cell
7
T cell
7
erythroblast
7
mature neutrophil
7
pancreatic acinar cell
7
pancreatic alpha cell
6
CD8-positive, alpha-beta T cell
6
SGBS preadipocytes
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
left cardiac atrium
6
liver
6
pancreas
5
CD14-positive, CD16-negative classical monocyte
5
chondrocyte
5
heart
5
inhibitory neuron
5
osteoblast
5
pancreatic delta cell
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
CD4-positive, alpha-beta T cell
4
alternatively activated macrophage
4
fibroblast of cardiac tissue
4
memory B cell
4
natural killer cell
4
pancreatic stellate cell
4
type II pneumocyte
3
cardiac fibroblast
3
HepG2
3
T-helper 1 cell
3
caudate nucleus
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
inflammatory macrophage
3
keratinocyte
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
right atrium auricular region
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
subcutaneous adipose tissue
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Ammon's horn
2
CD4-positive helper T cell
2
DG-75 cell
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
K562
2
KARPAS-422 cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Rh-4 cell
2
SUDHL5
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
U-266 cell
2
Z-138
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary epithelial cell
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
2
schwann cell
2
smooth muscle cell of the esophagus
2
spinal cord
2
spleen
2
superior temporal gyrus
1
hindlimb muscle
1
786-O cell
1
A-673 cell
1
A172
1
A549
1
ACHN
1
AG04449 cell
1
AG04450 cell
1
AG08396 cell
1
AG09309 cell
1
AG09319 cell
1
AG10803 cell
1
B-Lymphocytes
1
B-lymphocyte
1
BE(2)-C
1
BJ cell
1
BL-2 cell
1
CD1c-positive myeloid dendritic cell
1
CD34-PB
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
CD4-Positive T-Lymphocytes
1
CMK
1
COLO-829 cell
1
COLO205
1
Caco-2 cell
1
Caki2
1
D341 Med cell
1
Daoy
1
ECC-1
1
G-401 cell
1
GM03348
1
GM04503
1
GM04504
1
GM06990
1
GM10248
1
GM10266
1
GM12864
1
GM12865
1
GM13976
1
GM13977
1
GM18507
1
GM19240
Date released
5
May, 2021
1
November, 2022
Software used
6
macs
Lab
5
AMP-T2D consortium
1
Struan F.A. Grant, CHOP
Project
6
AMP
RFA
5
AMP
1
AMP2
annotation_type!
target gene predictions
files.file_type!
bed bed9
Showing 6 of 6 results
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Download
FileSet
DSR455VRI
released
Annotation file set
: Accessible chromatin of an established embryonic stem cell derived hypothalamic-like neuron model across three stages of in vitro differentiation (Embryonic Stem Cell).
Lab:
Struan F.A. Grant, CHOP
Project:
AMP
FileSet
DSR995THT
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Late pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR305VKL
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Early pancreatic progenitor cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR323EMN
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Gut tube cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR838FNO
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Embyonic stem cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR661PJZ
released
Annotation file set
: Accessible chromatin of differentiated hESCs from GSE149148 at developmental stage Definitive endoderm cells
Lab:
AMP-T2D consortium
Project:
AMP