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Schema
Citing CMDGA
Clear Filters
Annotation type
1
accessible chromatin
1
candidate regulatory elements
1
chromatin state
1
target gene predictions
Annotation Category
2
cis-regulatory elements
1
Target gene links
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
1
bed bed9
File set status
3
released
Genome assembly (visualization)
3
hg19
1
GRCh38
Organism
3
Homo sapiens
Biosample type
3
cell line
Biosample term
58
HeLa-S3
46
heart
43
stomach
42
H1-hESC
40
kidney
38
A549
36
brain
33
lung
33
muscle of arm
33
small intestine
32
adrenal gland
31
K562
31
muscle of leg
30
placenta
29
retina
28
large intestine
27
common myeloid progenitor, CD34-positive
26
B cell
26
left lung
26
muscle of back
26
thymus
23
CD14-positive monocyte
23
endothelial cell
23
liver
23
right lung
21
hematopoietic multipotent progenitor cell
21
monocyte
21
pericyte cell
21
right kidney
20
fibroblast
20
pigmented layer of retina
20
renal pelvis
19
HFFc6
19
neural progenitor cell
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
adipocyte
18
heart left ventricle
18
left kidney
17
macrophage
17
spinal cord
16
adipose tissue
16
smooth muscle cell
16
spleen
15
T cell
14
CD8-positive, alpha-beta memory T cell
14
hepatocyte
13
astrocyte
13
excitatory neuron
13
pancreas
13
trophoblast cell
12
MCF-7
12
embryonic stem cell
12
mononuclear cell
12
natural killer cell
12
regulatory T cell
12
sigmoid colon
11
CD8-positive, alpha-beta T cell
11
GM12878
11
endothelial cell of umbilical vein
11
fibroblast of cardiac tissue
11
heart right ventricle
11
islet of Langerhans
11
ovary
11
pancreatic beta cell
11
pancreatic ductal cell
11
psoas muscle
11
retinal pigment epithelial cell
10
gastrocnemius medialis
10
keratinocyte
10
mesenchymal stem cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pituitary stalk
10
thyroid gland
tibial nerve
9
EndoC_BH1
9
H9
9
T-helper 1 cell
9
body of pancreas
9
caudate nucleus
9
coronary artery
9
erythroblast
9
foreskin keratinocyte
9
mammary gland epithelial cell
9
muscle of trunk
9
pancreatic delta cell
9
skeletal muscle satellite cell
9
transverse colon
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
chorionic villus
8
colon epithelial cell
8
endocrine pancreas
8
fibroblast of lung
8
glutamatergic neuron
8
left cardiac atrium
8
lymphocyte
8
osteoblast
7
CD4-positive, alpha-beta T cell
7
HepG2
7
Peyer's patch
7
chorion membrane
7
fibroblast of dermis
7
layer of hippocampus
7
mature neutrophil
7
right atrium auricular region
7
skeletal muscle myoblast
7
skin fibroblast
7
testis
7
tibial artery
6
SGBS preadipocytes
6
angular gyrus
6
ascending aorta
6
breast epithelium
6
dendritic cell
6
endometrium adenocarcinoma
6
endothelial cell of hepatic sinusoid
6
epithelial cell of prostate
6
foreskin fibroblast
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
luminal epithelial cell of mammary gland
6
memory B cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
omental fat pad
6
skeletal muscle tissue
6
trophoblast
6
upper lobe of left lung
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
HUES8
5
KARPAS-422 cell
5
NAMALWA cell
5
SK-N-DZ
5
SK-N-SH
5
alternatively activated macrophage
5
bronchial epithelial cell
5
cardiac muscle cell
5
cerebellum
5
chondrocyte
5
cingulate gyrus
5
colonic mucosa
5
cortical cell of adrenal gland
5
duodenal mucosa
5
esophagus
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
5
gabaergic neuron
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
left renal cortex interstitium
5
left renal pelvis
5
limb
5
mesendoderm
5
mucosa of rectum
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
neutrophil
5
pancreatic stellate cell
5
prostate gland
5
stomach smooth muscle
5
temporal lobe
4
22Rv1
4
Brodmann (1909) area 46
4
CD4-positive helper T cell
4
CyT49
4
GM18507
4
GM19240
4
H7-hESC
4
HAP-1
4
HCT116
4
HT-29
4
IMR-90
4
LNCaP clone FGC
4
LoVo cell
4
MM.1S
4
OCI-LY7
4
PC-9
4
T47D
4
bipolar neuron
4
blood vessel smooth muscle cell
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of breast
4
globus pallidus
4
glomerular endothelial cell
4
iPSC derived cell line
4
inflammatory macrophage
4
kidney glomerular epithelial cell
Life stage
2
child
Date released
2
September, 2022
1
June, 2020
Software used
1
chromhmm
1
macs
1
r
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
biosample_term_name!
tibial nerve
Showing 3 of 3 results
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Download
FileSet
DSR044QWJ
released
Annotation file set
: Target gene predictions for BSS00390 GM03348 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR575YQR
released
Annotation file set
: Chromatin states for BSS00390 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR877OWF
released
Annotation file set
: Accessible chromatin annotation for Epidermis Fibrobl GM03348 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP