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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
5
histone modifications
3
binding sites
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
2
target gene predictions
Annotation Category
4
cis-regulatory elements
2
Target gene links
Annotation type Category
3
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
pCHi-C
Available data
5
bed bed3+
1
bed bed9
1
bigWig
File set status
6
released
Genome assembly (visualization)
6
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
6
cell line
Biosample term
57
HeLa-S3
46
heart
41
H1-hESC
41
stomach
40
kidney
37
A549
36
brain
33
lung
33
muscle of arm
32
small intestine
30
K562
30
adrenal gland
30
muscle of leg
29
placenta
29
retina
27
large intestine
26
common myeloid progenitor, CD34-positive
26
left lung
26
muscle of back
25
B cell
25
thymus
23
endothelial cell
23
right lung
22
liver
21
hematopoietic multipotent progenitor cell
21
pericyte cell
21
right kidney
20
fibroblast
20
pigmented layer of retina
20
renal pelvis
19
HFFc6
19
neural progenitor cell
19
renal cortex interstitium
18
CD4-positive, alpha-beta memory T cell
18
heart left ventricle
18
left kidney
16
macrophage
16
smooth muscle cell
16
spinal cord
15
T cell
15
adipose tissue
15
spleen
14
CD8-positive, alpha-beta memory T cell
14
adipocyte
13
excitatory neuron
13
hepatocyte
12
astrocyte
12
mononuclear cell
12
pancreas
12
psoas muscle
12
regulatory T cell
12
sigmoid colon
11
MCF-7
11
fibroblast of cardiac tissue
11
heart right ventricle
11
natural killer cell
11
pancreatic beta cell
11
retinal pigment epithelial cell
11
trophoblast cell
10
GM12878
10
endothelial cell of umbilical vein
10
islet of Langerhans
10
ovary
10
pancreatic alpha cell
10
pancreatic ductal cell
10
tibial nerve
9
CD8-positive, alpha-beta T cell
9
T-helper 1 cell
9
caudate nucleus
9
foreskin keratinocyte
9
gastrocnemius medialis
9
keratinocyte
9
mammary gland epithelial cell
9
mesenchymal stem cell
9
pancreatic acinar cell
9
pancreatic delta cell
9
skeletal muscle satellite cell
8
CD14-positive monocyte
8
H9
8
T-helper 17 cell
8
T-helper 2 cell
8
aorta
8
body of pancreas
8
chorionic villus
8
colon epithelial cell
8
coronary artery
8
endocrine pancreas
8
erythroblast
8
glutamatergic neuron
8
left cardiac atrium
8
lymphocyte
8
muscle of trunk
8
thyroid gland
8
tibial artery
8
transverse colon
7
CD4-positive, alpha-beta T cell
7
Peyer's patch
7
chorion membrane
7
fibroblast of lung
7
layer of hippocampus
7
mature neutrophil
7
monocyte
7
osteoblast
7
right atrium auricular region
7
skeletal muscle myoblast
7
skin fibroblast
7
temporal lobe
7
testis
6
HepG2
6
SGBS preadipocytes
6
angular gyrus
6
ascending aorta
6
endometrium adenocarcinoma
6
endothelial cell of hepatic sinusoid
6
fibroblast of dermis
6
frontal cortex
6
immortal human breast epithelial cell line cell
6
kidney tubule cell
6
luminal epithelial cell of mammary gland
6
memory B cell
6
naive T cell
6
neurosphere
6
olfactory receptor cell
6
omental fat pad
6
skeletal muscle tissue
6
trophoblast
6
upper lobe of left lung
5
Ammon's horn
5
CD14-positive, CD16-negative classical monocyte
5
HUES8
5
NAMALWA cell
5
SK-N-DZ
5
alternatively activated macrophage
5
breast epithelium
5
bronchial epithelial cell
5
cerebellum
5
chondrocyte
5
cingulate gyrus
5
colonic mucosa
5
cortical cell of adrenal gland
5
duodenal mucosa
5
epithelial cell of prostate
5
esophagus
5
esophagus muscularis mucosa
5
esophagus squamous epithelium
5
eye
foreskin fibroblast
5
gabaergic neuron
5
glomerular visceral epithelial cell
5
hepatic stellate cell
5
inhibitory neuron
5
left renal cortex interstitium
5
left renal pelvis
5
limb
5
mucosa of rectum
5
naive B cell
5
naive thymus-derived CD8-positive, alpha-beta T cell
5
neutrophil
5
pancreatic stellate cell
5
prostate gland
5
right cardiac atrium
5
right renal cortex interstitium
5
right renal pelvis
5
skeletal muscle fiber
5
stomach smooth muscle
5
thoracic aorta
4
22Rv1
4
Brodmann (1909) area 46
4
CyT49
4
GM18507
4
GM19240
4
HCT116
4
KARPAS-422 cell
4
LNCaP clone FGC
4
SK-N-SH
4
T47D
4
blood vessel smooth muscle cell
4
cardiac muscle cell
4
choroid plexus epithelial cell
4
dermis blood vessel endothelial cell
4
dermis lymphatic vessel endothelial cell
4
endodermal cell
4
endothelial cell of lymphatic vessel
4
enteric smooth muscle cell
4
fibroblast of breast
4
globus pallidus
4
glomerular endothelial cell
4
iPSC derived cell line
4
inflammatory macrophage
4
kidney glomerular epithelial cell
4
lower leg skin
4
medulla oblongata
4
megakaryocyte
4
mesendoderm
4
midbrain
4
muscle cell
4
muscle layer of colon
4
muscle layer of duodenum
4
myoepithelial cell of mammary gland
4
neuron
Disease term
2
hepatocellular carcinoma
Organ
6
liver
Life stage
2
child
1
adult
Date released
2
September, 2022
1
August, 2017
1
February, 2021
1
June, 2020
1
March, 2020
May, 2021
Software used
2
chromhmm
2
macs
1
chicago
1
r
Lab
5
AMP-T2D consortium
1
Stephen Parker, UMich
Project
6
AMP
RFA
6
AMP
biosample_term_name!
foreskin fibroblast
month_released!
May, 2021
Showing 6 of 6 results
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Download
FileSet
DSR306YJJ
released
Annotation file set
: Target gene predictions for BSS00558 HepG2 from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR533TVB
released
Annotation file set
: Chromatin states for BSS00558 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR848MAN
released
Annotation file set
: Accessible chromatin of E-MTAB-7543 - ATAC-seq of HepG2 cells
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR505YPM
released
Annotation file set
: Accessible chromatin annotation for Liver Hep G2 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR499URQ
released
Annotation file set
: A target gene prediction annotation in HepG2 of DSR452PKJ pCHi-C E-MTAB-7144
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR035696
released
Annotation file set
: ChromHMM 13-state model for Hepatocellular Carcinoma Cell Line
Lab:
Stephen Parker, UMich
Project:
AMP