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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
37
target gene predictions
8
gene expression
3
chromatin state
2
binding sites
1
histone modifications
0
accessible chromatin
Annotation Category
3
cis-regulatory elements
Annotation type Category
3
ChIP-seq
DNase-seq
Available data
2
bed bed9
1
bed bed3+
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
2
cell line
1
stem cell
Biosample term
24
retina
23
kidney
22
heart
20
pigmented layer of retina
19
stomach
18
A549
18
brain
16
endothelial cell
16
fibroblast
16
lung
16
monocyte
16
muscle of arm
15
muscle of leg
small intestine
14
B cell
14
adrenal gland
14
neural progenitor cell
14
placenta
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
large intestine
13
left lung
13
muscle of back
12
liver
12
macrophage
11
adipocyte
11
embryonic stem cell
11
pericyte cell
11
right lung
11
thymus
10
T cell
10
hematopoietic multipotent progenitor cell
10
right kidney
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
heart left ventricle
9
islet of Langerhans
9
left kidney
9
renal cortex interstitium
9
renal pelvis
8
EndoC_BH1
8
adipose tissue
8
hepatocyte
8
pancreatic beta cell
8
retinal pigment epithelial cell
7
CD8-positive, alpha-beta memory T cell
7
K562
7
erythroblast
7
mature neutrophil
7
pancreatic acinar cell
7
pancreatic alpha cell
7
pancreatic ductal cell
7
skeletal muscle satellite cell
7
spinal cord
7
spleen
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
left cardiac atrium
6
mononuclear cell
6
natural killer cell
6
regulatory T cell
5
CD14-positive, CD16-negative classical monocyte
5
CD8-positive, alpha-beta T cell
5
MCF-7
5
SGBS preadipocytes
5
T-helper 1 cell
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
coronary artery
5
endothelial cell of umbilical vein
5
fibroblast of cardiac tissue
5
heart right ventricle
5
inhibitory neuron
5
keratinocyte
5
mesenchymal stem cell
5
pancreatic delta cell
5
sigmoid colon
5
skeletal muscle fiber
5
temporal lobe
5
tibial nerve
5
trophoblast cell
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
body of pancreas
4
caudate nucleus
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of lung
4
foreskin keratinocyte
4
gastrocnemius medialis
4
layer of hippocampus
4
mammary gland epithelial cell
4
memory B cell
4
muscle of trunk
4
ovary
4
pancreas
4
pancreatic stellate cell
4
psoas muscle
4
thoracic aorta
4
thyroid gland
4
tibial artery
4
transverse colon
4
type II pneumocyte
3
HeLa-S3
3
HepG2
3
Peyer's patch
3
ascending aorta
3
chorion membrane
3
cingulate gyrus
3
colonic mucosa
3
cortical cell of adrenal gland
3
duodenal mucosa
3
endometrium adenocarcinoma
3
endothelial cell of lymphatic vessel
3
enterocyte
3
fibroblast of dermis
3
gabaergic neuron
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
luminal epithelial cell of mammary gland
3
mucosa of rectum
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
omental fat pad
3
osteoblast
3
right atrium auricular region
3
right cardiac atrium
3
skeletal muscle myoblast
3
skeletal muscle tissue
3
skin fibroblast
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
testis
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
3
upper lobe of left lung
2
22Rv1
2
Brodmann (1909) area 46
2
ESC derived cell line
2
GM12878
2
H1-hESC
2
KARPAS-422 cell
2
LNCaP clone FGC
2
Muller cell
2
NAMALWA cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
SK-N-DZ
2
SK-N-SH
2
T follicular helper cell
2
T47D
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
breast epithelium
2
bronchial epithelial cell
2
capillary endothelial cell
2
cardiac muscle cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellum
2
ciliated cell
2
club cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endodermal cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of prostate
2
esophagus
2
esophagus muscularis mucosa
2
esophagus squamous epithelium
2
extracellular matrix secreting cell
2
eye
2
fetal cardiomyocyte
2
fibroblast of breast
2
foreskin fibroblast
2
frontal cortex
2
gamma-delta T cell
2
germinal matrix
2
glial cell
2
glomerular visceral epithelial cell
2
hepatic stellate cell
2
kidney glomerular epithelial cell
2
kidney tubule cell
Organ
3
embryo
Life stage
3
embryonic
Date released
2
September, 2022
1
August, 2017
Software used
3
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
annotation_type_category!
DNase-seq
biosample_term_name!
small intestine
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR002BRL
released
Annotation file set
: Chromatin states for BSS00478 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR523WUG
released
Annotation file set
: Chromatin states for BSS00277 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR642714
released
Annotation file set
: ChromHMM 13-state model for H1
Lab:
Stephen Parker, UMich
Project:
AMP