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Schema
Citing CMDGA
Clear Filters
Annotation type
8
candidate regulatory elements
4
chromatin state
4
target gene predictions
0
accessible chromatin
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
ChIP-seq
Available data
4
bed bed9
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
17
muscle of arm
17
muscle of leg
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
left lung
13
liver
13
muscle of back
12
B cell
12
right lung
12
thymus
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipocyte
10
renal cortex interstitium
9
CD4-positive, alpha-beta memory T cell
9
hepatocyte
9
left kidney
9
retinal pigment epithelial cell
9
spinal cord
8
K562
8
adipose tissue
8
islet of Langerhans
8
pancreas
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
left cardiac atrium
7
mature neutrophil
7
regulatory T cell
7
tibial nerve
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
heart right ventricle
6
mononuclear cell
6
osteoblast
6
sigmoid colon
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
gastrocnemius medialis
5
natural killer cell
5
ovary
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle myoblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
HepG2
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
endothelial cell of hepatic sinusoid
4
fibroblast of lung
4
frontal cortex
4
glomerular visceral epithelial cell
4
glutamatergic neuron
4
kidney tubule cell
4
layer of hippocampus
4
mammary gland epithelial cell
4
mesenchymal stem cell
4
monocyte
4
muscle of trunk
4
omental fat pad
4
pancreatic ductal cell
4
skin fibroblast
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
keratinocyte
3
kidney glomerular epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
mucosa of rectum
3
naive T cell
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
Organ
4
embryo
4
extraembryonic component
Life stage
4
embryonic
Date released
4
September, 2022
Software used
4
chromhmm
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
annotation_type_category!
snATAC-seq
month_released!
May, 2021
Showing 4 of 4 results
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Download
FileSet
DSR409IHE
released
Annotation file set
: Chromatin states for BSS00217 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR753EVM
released
Annotation file set
: Chromatin states for BSS00216 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR056LGM
released
Annotation file set
: Chromatin states for BSS00215 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR260LUQ
released
Annotation file set
: Chromatin states for BSS00214 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP