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Schema
Citing CMDGA
Clear Filters
Annotation type
4
accessible chromatin
2
target gene predictions
1
variant allelic effects
0
chromatin state
Annotation Category
4
cis-regulatory elements
Annotation type Category
4
snATAC-seq
Available data
4
bed bed3+
4
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
26
heart
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
kidney
18
monocyte
17
muscle of arm
17
muscle of leg
16
B cell
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
fibroblast
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
endothelial cell
13
excitatory neuron
13
left lung
13
liver
13
muscle of back
12
right lung
12
thymus
11
adipocyte
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
macrophage
11
pericyte cell
11
renal pelvis
11
right kidney
10
T cell
10
embryonic stem cell
10
islet of Langerhans
10
renal cortex interstitium
10
retinal pigment epithelial cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
left kidney
8
adipose tissue
8
pancreas
8
pancreatic beta cell
8
pancreatic ductal cell
8
regulatory T cell
8
smooth muscle cell
8
spinal cord
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
erythroblast
7
left cardiac atrium
7
mature neutrophil
7
natural killer cell
7
pancreatic acinar cell
7
pancreatic alpha cell
7
tibial nerve
6
CD8-positive, alpha-beta T cell
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
glutamatergic neuron
6
heart right ventricle
6
mononuclear cell
6
osteoblast
6
sigmoid colon
6
skeletal muscle satellite cell
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
SGBS preadipocytes
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
gastrocnemius medialis
5
hepatocyte
5
inhibitory neuron
5
keratinocyte
5
mammary gland epithelial cell
5
mesenchymal stem cell
5
ovary
5
pancreatic delta cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle myoblast
5
skin fibroblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
frontal cortex
4
hepatic stellate cell
4
kidney tubule cell
4
layer of hippocampus
4
memory B cell
4
muscle of trunk
4
omental fat pad
4
pancreatic stellate cell
4
testis
4
thoracic aorta
4
type II pneumocyte
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
cingulate gyrus
3
colon epithelial cell
3
colonic mucosa
3
cortical cell of adrenal gland
3
duodenal mucosa
3
endothelial cell of lymphatic vessel
3
enterocyte
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
midbrain
3
mucosa of rectum
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle fiber
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
type I pneumocyte
3
urinary bladder
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
Muller cell
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
T follicular helper cell
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
basal cell
2
bipolar neuron
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain microvascular endothelial cell
2
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
cerebellar cortex
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
dermis blood vessel endothelial cell
2
dermis lymphatic vessel endothelial cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
embryonic facial prominence
2
endocardial cell
2
endodermal cell
2
endothelial cell of hepatic sinusoid
2
enteric neuron
Organ
4
epithelium
4
lung
Date released
3
November, 2021
1
April, 2020
Software used
3
macs
Lab
3
Bing Ren, UCSD
1
Xin Sun, UCSD
Project
3
ENCODE
1
LungMap
RFA
3
ENCODE3
1
LungMap2
award.rfa!
AMP2
biosample_type!
cell line
Showing 4 of 4 results
table-tab-icon
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Download
FileSet
DSR731YZV
released
Annotation file set
: ATAC-seq peaks in AT2 cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR314DTK
released
Annotation file set
: Accessible chromatin annotation of Fetal Broncial and Alveolar Epithelial Cell 2 from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR413LRE
released
Annotation file set
: Accessible chromatin annotation of Alveolar Type 2 (AT2) Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR002AWQ
released
Annotation file set
: Accessible chromatin annotation of Alverolar Type 2,Immune from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE