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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
target gene predictions
3
candidate regulatory elements
3
chromatin state
2
accessible chromatin
2
binding sites
1
histone modifications
1
variant allelic effects
Annotation Category
5
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
1
snATAC-seq
Available data
3
bed bed9
2
bed bed3+
1
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
4
GRCh38
Organism
5
Homo sapiens
Biosample type
4
primary cell
1
in vitro differentiated cells
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
18
monocyte
17
muscle of arm
17
muscle of leg
16
endothelial cell
16
fibroblast
16
lung
16
small intestine
15
B cell
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
liver
13
muscle of back
12
adipocyte
12
macrophage
12
right lung
12
thymus
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
T cell
10
hepatocyte
10
islet of Langerhans
10
pericyte cell
10
renal cortex interstitium
10
retinal pigment epithelial cell
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
left kidney
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
pancreas
8
pancreatic beta cell
8
pancreatic ductal cell
8
regulatory T cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
endothelial cell of umbilical vein
7
erythroblast
7
fibroblast of cardiac tissue
7
left cardiac atrium
7
mature neutrophil
7
pancreatic acinar cell
7
pancreatic alpha cell
7
skeletal muscle satellite cell
7
tibial nerve
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
natural killer cell
6
osteoblast
6
sigmoid colon
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
foreskin keratinocyte
5
gastrocnemius medialis
5
inhibitory neuron
5
keratinocyte
5
mammary gland epithelial cell
5
ovary
5
pancreatic delta cell
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
skin fibroblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
HepG2
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
colon epithelial cell
4
endocrine pancreas
4
fibroblast of lung
4
frontal cortex
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
kidney tubule cell
4
layer of hippocampus
4
memory B cell
4
muscle of trunk
4
omental fat pad
4
pancreatic stellate cell
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
cingulate gyrus
3
colonic mucosa
3
cortical cell of adrenal gland
3
duodenal mucosa
3
endometrium adenocarcinoma
3
enterocyte
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
luminal epithelial cell of mammary gland
3
medulla oblongata
3
midbrain
3
mucosa of rectum
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
type I muscle cell
3
type II muscle cell
3
type II pneumocyte
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
Organ
5
epithelium
5
mammary gland
Life stage
2
adult
1
unknown
Date released
3
September, 2022
1
June, 2020
1
November, 2021
Software used
3
chromhmm
2
macs
Lab
4
AMP-T2D consortium
1
Bing Ren, UCSD
Project
4
AMP
1
ENCODE
RFA
4
AMP
1
ENCODE3
award.rfa!
LungMap2
biosample_term_name!
Adipose SGBS cell line (adipocyte)
Showing 5 of 5 results
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Download
FileSet
DSR267DXB
released
Annotation file set
: Chromatin states for BSS01213 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR285UOJ
released
Annotation file set
: Chromatin states for BSS01211 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR887SUU
released
Annotation file set
: Chromatin states for BSS01209 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR492XEZ
released
Annotation file set
: Accessible chromatin annotation of Mammary Epithelial from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR534MWT
released
Annotation file set
: Accessible chromatin annotation for Breast Breast cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP