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Schema
Citing CMDGA
Clear Filters
Annotation type
5
candidate regulatory elements
2
accessible chromatin
2
chromatin state
2
target gene predictions
1
binding sites
1
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
2
bed bed9
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
cell line
Biosample term
19
A549
8
EndoC_BH1
8
K562
6
MCF-7
4
HepG2
3
GM12878
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
endometrium adenocarcinoma
3
immortal human breast epithelial cell line cell
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
M059J
2
MG63
2
MM.1S
2
NCI-H226 cell
2
NT2-D1 cell
2
OCI-LY7
2
PC-3
2
PC-9
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SK-N-SH
2
SUDHL5
2
SW480
2
T47D
2
U-266 cell
2
WERI-Rb-1
2
Z-138
2
fibroblast of cardiac tissue
1
786-O cell
1
8988T
1
A-673 cell
1
A673
1
ACC112
1
AG08395 cell
1
AG20443
1
BL-2 cell
1
C4-2B
1
COLO-829 cell
1
COLO205
1
COLO829
1
CWRU1
1
D341 Med cell
1
DND-41
1
DOHH2
1
ECC-1
1
EH
1
EL
1
ELF-1
1
ELR
1
ES-I3
1
G-401 cell
1
G401
1
GM08714
1
GM12875
1
GM12891
1
GM12892
1
GM13976
1
GM13977
1
GM19238
1
GM19239
1
GM20000
1
GM23338
1
GP5d
1
H54
1
H9
1
HAC cell
1
HBMEC cell
1
HCT-116 cell
1
HCT116
1
HEK293T
1
HGF
1
HK-2 cell
1
HPDE6-E6E7
1
HS-27A
1
HS-5
1
HT1080
1
HTR-8/Svneo
1
HUES48
1
HUES64
1
HUES8
1
HeLa cell
1
Hodgkin lymphoma cell line
1
HuH-7.5
1
HuTu-80 cell
1
JVM-2 cell
1
Jurkat
1
KMS-11
1
KOPT-K1
1
Kasumi-1
1
L-1236 cell
1
L-428 cell
1
LNCAP
1
Loucy
1
MCF10A-Er-Src cell
1
MDA-MB-231 cell
1
MOLM-13 cell
1
Myoblasts
1
NB-4 cell
1
NB4
1
NCCIT cell
1
NCI-H460 cell
1
NCI-H929
1
NHBE cell
1
NHDF cell
1
NHEK
1
Normal Human Astrocytes
1
OCI-AML3
1
OCI-LY1
1
OCI-LY3
1
PA-TU-8988T cell
1
PANC-1 cell
1
Panc1
1
REH cell
1
RKO
1
RS4-11 cell
1
RWPE2
1
Rh-5 cell
1
Rhabdomyosarcoma
1
SAEC
1
SGBS preadipocytes
1
SK-CO-1
1
SK-MEL-5
1
SK-N-SH_RA
1
SKH1-Hr hr
1
SKMC
1
SU-DHL-6
1
SW1116
1
Saos-2 cell
1
T-47D cell
1
T84
1
U-87 MG
1
U2OS
1
U937
1
UCSF-4
1
VCaP cell
1
WI-38 cell
1
WI38
1
ZR-75-1 cell
1
acute myeloid leukemia
1
adipose-derived mesenchymal stem cell
1
brain pericyte
1
cardiac myocyte cell derived cell line
1
choroid plexus epithelial cell
1
colon cancer cell line
1
colon carcinoma
1
colon epithelial cell
1
dermal fibroblast
1
epithelial cell of prostate
Disease term
2
neuroblastoma
Organ
3
brain
1
lymph node
Life stage
2
child
Date released
2
June, 2020
2
September, 2022
Software used
2
chromhmm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
Showing 4 of 4 results
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Download
FileSet
DSR573TZR
released
Annotation file set
: Chromatin states for BSS01558 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR650WJH
released
Annotation file set
: Chromatin states for BSS01554 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR652FVJ
released
Annotation file set
: Accessible chromatin annotation for Neural SK-N-DZ from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR299GUT
released
Annotation file set
: Accessible chromatin annotation for Blood GM13976 from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP