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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
4
candidate regulatory elements
3
Fine-mapped variants
3
chromatin state
2
target gene predictions
1
accessible chromatin
1
eQTL
1
gene expression
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
3
ChIP-seq
1
DNase-seq
Available data
3
bed bed9
1
bed bed3+
1
bigBed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
GRCh38
4
hg19
Organism
4
Homo sapiens
Biosample type
4
tissue
Biosample term
26
heart
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
19
kidney
17
monocyte
17
muscle of arm
muscle of leg
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
left lung
13
muscle of back
12
B cell
12
right lung
12
thymus
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
liver
11
renal pelvis
11
right kidney
10
embryonic stem cell
10
renal cortex interstitium
9
CD4-positive, alpha-beta memory T cell
9
left kidney
9
retinal pigment epithelial cell
9
spinal cord
8
EndoC_BH1
8
adipose tissue
8
pancreas
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
K562
7
islet of Langerhans
7
mature neutrophil
7
regulatory T cell
7
tibial nerve
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
adipocyte
6
coronary artery
6
endothelial cell of umbilical vein
6
heart right ventricle
6
mononuclear cell
6
osteoblast
6
sigmoid colon
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T cell
5
T-helper 17 cell
5
T-helper 2 cell
5
caudate nucleus
5
chondrocyte
5
fibroblast of cardiac tissue
5
foreskin keratinocyte
5
gastrocnemius medialis
5
mesenchymal stem cell
5
natural killer cell
5
ovary
5
psoas muscle
5
right atrium auricular region
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD8-positive, alpha-beta T cell
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
frontal cortex
4
glutamatergic neuron
4
hepatocyte
4
kidney tubule cell
4
mammary gland epithelial cell
4
muscle of trunk
4
omental fat pad
4
skeletal muscle myoblast
4
skin fibroblast
4
temporal lobe
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
CD4-positive, alpha-beta T cell
3
HeLa-S3
3
HepG2
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
bronchial epithelial cell
3
cardiac muscle cell
3
cerebellum
3
choroid plexus epithelial cell
3
endometrium adenocarcinoma
3
epithelial cell of prostate
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
fibroblast of dermis
3
fibroblast of lung
3
foreskin fibroblast
3
globus pallidus
3
glomerular endothelial cell
3
glomerular visceral epithelial cell
3
hepatic stellate cell
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
kidney glomerular epithelial cell
3
layer of hippocampus
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
naive T cell
3
neurosphere
3
occipital lobe
3
pancreatic beta cell
3
pons
3
prostate gland
3
putamen
3
renal cortical epithelial cell
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle satellite cell
3
skeletal muscle tissue
3
superior temporal gyrus
3
tongue
3
trophoblast
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM12878
2
GM18507
2
GM19240
2
GM23248
2
H1-hESC
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
M059J
2
MG63
2
MM.1S
2
NCI-H226 cell
2
NT2-D1 cell
2
OCI-LY7
2
PC-3
2
PC-9
Organ
4
blood vessel
4
vasculature
Life stage
4
adult
Date released
2
September, 2022
1
January, 2020
1
October, 2019
Software used
3
chromhmm
1
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_term_name!
muscle of leg
Showing 4 of 4 results
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Download
FileSet
DSR309BUW
released
Annotation file set
: Chromatin states for BSS00088 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR016LZI
released
Annotation file set
: Chromatin states for BSS00087 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR351MEA
released
Annotation file set
: Accessible chromatin annotation of ascending aorta from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR220DMW
released
Annotation file set
: ChromHMM 16-state model for ascending aorta from ENCODE ChIP-seq data
Lab:
AMP-T2D consortium
Project:
AMP