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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
eQTL
5
gene expression
3
Fine-mapped variants
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
differential activity
1
variant allelic effects
Annotation Category
3
cis-regulatory elements
Annotation type Category
2
ATAC-seq
1
ChIP-seq
Available data
3
bed bed3+
2
bigWig
File set status
3
released
Genome assembly (visualization)
3
hg19
2
GRCh38
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
19
A549
18
monocyte
17
muscle of arm
17
muscle of leg
16
B cell
16
fibroblast
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
common myeloid progenitor, CD34-positive
13
excitatory neuron
13
left lung
13
liver
13
macrophage
13
muscle of back
12
adipocyte
12
right lung
12
thymus
11
T cell
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
pericyte cell
11
renal pelvis
11
right kidney
10
islet of Langerhans
10
renal cortex interstitium
10
smooth muscle cell
9
CD4-positive, alpha-beta memory T cell
9
astrocyte
9
left kidney
9
spinal cord
8
K562
8
adipose tissue
8
pancreas
8
regulatory T cell
8
spleen
7
CD8-positive, alpha-beta memory T cell
7
erythroblast
7
fibroblast of cardiac tissue
7
left cardiac atrium
7
mature neutrophil
7
natural killer cell
7
skeletal muscle satellite cell
7
tibial nerve
6
CD8-positive, alpha-beta T cell
6
MCF-7
6
SGBS preadipocytes
6
T-helper 1 cell
6
caudate nucleus
6
coronary artery
6
glutamatergic neuron
6
heart right ventricle
6
mesenchymal stem cell
6
mononuclear cell
6
osteoblast
6
sigmoid colon
6
tibial artery
6
trophoblast cell
5
CD14-positive, CD16-negative classical monocyte
5
T-helper 17 cell
5
T-helper 2 cell
5
chondrocyte
5
gastrocnemius medialis
5
inhibitory neuron
5
ovary
5
psoas muscle
5
right atrium auricular region
5
skeletal muscle fiber
5
skeletal muscle myoblast
5
skin fibroblast
5
temporal lobe
5
thyroid gland
5
transverse colon
4
CD14-positive monocyte
4
CD4-positive, alpha-beta T cell
4
HepG2
4
Peyer's patch
4
alternatively activated macrophage
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
fibroblast of lung
4
frontal cortex
4
hepatic stellate cell
4
layer of hippocampus
4
memory B cell
4
muscle of trunk
4
omental fat pad
4
pancreatic stellate cell
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
cardiac fibroblast
3
Ammon's horn
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
cardiac muscle cell
3
cerebellum
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
eye
3
fibroblast of dermis
3
foreskin fibroblast
3
gabaergic neuron
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
inflammatory macrophage
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
midbrain
3
mucosa of rectum
3
naive B cell
3
naive T cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
neuron
3
neurosphere
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
type I muscle cell
3
type II muscle cell
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CD1c-positive myeloid dendritic cell
2
CD4-positive helper T cell
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
Organ
epithelium
3
adipose tissue
3
connective tissue
Life stage
1
adult
Date released
1
August, 2017
1
January, 2020
1
September, 2018
Software used
2
macs
1
chromhmm
Lab
2
AMP-T2D consortium
1
Stephen Parker, UMich
Project
3
AMP
RFA
3
AMP
biosample_term_name!
Muller cell
organ_slims!
epithelium
Showing 3 of 3 results
table-tab-icon
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Download
FileSet
DSR687BVG
released
Annotation file set
: Accessible chromatin annotation of adipose white tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR978YHK
released
Annotation file set
: ATAC-seq sites in subcutaneous adipose tissue for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR804392
released
Annotation file set
: ChromHMM 13-state model for Adipose
Lab:
Stephen Parker, UMich
Project:
AMP