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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
6
candidate regulatory elements
5
target gene predictions
4
accessible chromatin
4
chromatin state
3
binding sites
2
histone modifications
1
caQTL
1
eQTL
1
gene expression
Annotation Category
8
cis-regulatory elements
Annotation type Category
4
ChIP-seq
2
DNase-seq
2
snATAC-seq
Available data
4
bed bed3+
4
bed bed9
1
bigBed bed9
1
bigWig
File set status
8
released
Genome assembly (visualization)
8
hg19
4
GRCh38
Organism
8
Homo sapiens
Biosample type
5
primary cell
3
in vitro differentiated cells
Biosample term
16
fibroblast
12
adipocyte
11
pericyte cell
8
adipose tissue
7
fibroblast of cardiac tissue
6
mesenchymal stem cell
6
osteoblast
5
chondrocyte
5
skin fibroblast
4
fibroblast of lung
4
hepatic stellate cell
4
omental fat pad
4
pancreatic stellate cell
3
cardiac fibroblast
3
fibroblast of dermis
3
foreskin fibroblast
3
subcutaneous adipose tissue
2
GM23248
2
brain pericyte
2
extracellular matrix secreting cell
2
fibroblast of mammary gland
2
fibroblast of peridontal ligament
2
fibroblast of pulmonary artery
2
fibroblast of the conjunctiva
2
fibroblast of villous mesenchyme
2
mesangial cell
1
HT1080
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
amnion mesenchymal stem cell
1
amniotic stem cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of gingiva
1
fibroblast of the aortic adventitia
1
luteal cell
1
preadipocyte
1
pulmonary interstitial fibroblast
1
stromal cell
1
stromal cell of bone marrow
1
subcutaneous abdominal adipose tissue
Organ
8
connective tissue
2
extraembryonic component
2
placenta
Life stage
2
adult
2
unknown
1
embryonic
Date released
3
September, 2022
2
June, 2020
1
February, 2024
1
May, 2022
1
October, 2019
Software used
4
chromhmm
4
macs
Lab
7
AMP-T2D consortium
1
Stephen Parker, UMich
Project
8
AMP
RFA
7
AMP
1
AMP2
files.file_type!
txt
Showing 8 of 8 results
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Download
FileSet
DSR866HKF
released
Annotation file set
: Chromatin states for BSS00350 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR073XBJ
released
Annotation file set
: Chromatin states for BSS01261 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR625MZJ
released
Annotation file set
: Chromatin states for BSS01260 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR707RQM
released
Annotation file set
: Accessible chromatin from snATAC-seq of mesenchymal stem cell from human skeletal muscle
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR847RRB
released
Annotation file set
: Cell type chromatin broad peaks and bw of mesenchymal stem cell from Stephen Parker Lab of FNIH skeletal muscle
Lab:
Stephen Parker, UMich
Project:
AMP
FileSet
DSR263KFM
released
Annotation file set
: Accessible chromatin annotation for Placenta HVMF from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR497YXK
released
Annotation file set
: Accessible chromatin annotation for Others Mesenchymal stem cells from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR139NCZ
released
Annotation file set
: ChromHMM 15-state model for Mesenchymal Stem Cell from ENCODE ChIP-seq data.
Lab:
AMP-T2D consortium
Project:
AMP