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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
Fine-mapped variants
3
target gene predictions
2
accessible chromatin
2
candidate regulatory elements
2
chromatin state
2
eQTL
2
gene expression
1
variant allelic effects
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
DNase-seq
Available data
2
bed bed3+
2
bed bed9
1
bigWig
File set status
4
released
Genome assembly (visualization)
4
hg19
3
GRCh38
Organism
4
Homo sapiens
Biosample type
primary cell
4
tissue
Biosample term
26
heart
26
kidney
26
retina
22
stomach
20
brain
20
pigmented layer of retina
19
A549
17
muscle of arm
17
muscle of leg
16
lung
16
small intestine
15
adrenal gland
15
placenta
14
large intestine
14
neural progenitor cell
13
left lung
13
liver
13
muscle of back
12
right lung
12
thymus
11
embryonic stem cell
11
heart left ventricle
11
hematopoietic multipotent progenitor cell
11
renal pelvis
11
right kidney
10
adipocyte
10
renal cortex interstitium
9
islet of Langerhans
9
left kidney
9
spinal cord
8
EndoC_BH1
8
K562
8
adipose tissue
8
pancreas
8
spleen
7
left cardiac atrium
7
tibial nerve
6
MCF-7
6
SGBS preadipocytes
6
caudate nucleus
6
coronary artery
6
heart right ventricle
6
retinal pigment epithelial cell
6
sigmoid colon
6
tibial artery
5
chondrocyte
5
gastrocnemius medialis
5
ovary
5
psoas muscle
5
right atrium auricular region
5
temporal lobe
5
thyroid gland
5
transverse colon
4
HepG2
4
Peyer's patch
4
angular gyrus
4
aorta
4
ascending aorta
4
body of pancreas
4
chorion membrane
4
chorionic villus
4
endocrine pancreas
4
frontal cortex
4
layer of hippocampus
4
muscle of trunk
4
omental fat pad
4
testis
4
thoracic aorta
4
upper lobe of left lung
3
Ammon's horn
3
GM12878
3
H1-hESC
3
HeLa-S3
3
KARPAS-422 cell
3
NAMALWA cell
3
SK-N-DZ
3
breast epithelium
3
cerebellum
3
cingulate gyrus
3
colonic mucosa
3
duodenal mucosa
3
endometrium adenocarcinoma
3
esophagus muscularis mucosa
3
esophagus squamous epithelium
3
eye
3
globus pallidus
3
immortal human breast epithelial cell line cell
3
left renal cortex interstitium
3
left renal pelvis
3
limb
3
medulla oblongata
3
mesenchymal stem cell
3
midbrain
3
mucosa of rectum
3
occipital lobe
3
pons
3
prostate gland
3
putamen
3
right cardiac atrium
3
right renal cortex interstitium
3
right renal pelvis
3
skeletal muscle tissue
3
stomach smooth muscle
3
subcutaneous adipose tissue
3
substantia nigra
3
superior temporal gyrus
3
tongue
3
trophoblast
3
urinary bladder
2
22Rv1
2
A172
2
ACHN
2
AG04449 cell
2
AG04450 cell
2
AG08396 cell
2
AG09309 cell
2
AG09319 cell
2
AG10803 cell
2
B cell
2
BE(2)-C
2
BJ cell
2
Brodmann (1909) area 46
2
CMK
2
Caco-2 cell
2
Caki2
2
DG-75 cell
2
Daoy
2
ESC derived cell line
2
GM03348
2
GM04503
2
GM04504
2
GM06990
2
GM10248
2
GM10266
2
GM12864
2
GM12865
2
GM18507
2
GM19240
2
GM23248
2
H4
2
H7-hESC
2
HAP-1
2
HEK293
2
HL-60
2
HT-29
2
HUES6
2
HuH-7
2
IMR-90
2
KBM-7
2
L1-S8
2
L1-S8R
2
LHCN-M2
2
LNCaP clone FGC
2
LoVo cell
2
M059J
2
MG63
2
MM.1S
2
NCI-H226 cell
2
NT2-D1 cell
2
OCI-LY7
2
PC-3
2
PC-9
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
RCC 7860
2
RPMI7951
2
RPMI8226
2
RWPE1
2
Rh-4 cell
2
SJCRH30
2
SJSA1
2
SK-N-MC
2
SK-N-SH
2
SUDHL5
2
SW480
2
T47D
2
U-266 cell
2
WERI-Rb-1
2
Z-138
2
adipose-derived stem cell
2
bipolar neuron
2
cardiac muscle cell
2
cerebellar cortex
2
differentiating adipose-derived stem cell
2
embryonic facial prominence
2
endodermal cell
2
esophagus
2
fibroblast of cardiac tissue
2
germinal matrix
2
iPS DF 4.7 Cell Line
2
inferior parietal cortex
2
lower leg skin
2
mesendoderm
2
middle frontal gyrus
2
muscle cell
2
muscle layer of colon
2
muscle layer of duodenum
2
olfactory neurosphere cell line
2
pancreatic ductal cell
2
pancreatic stellate cell
2
parathyroid adenoma
Organ
4
brain
Life stage
3
adult
Date released
2
September, 2022
1
January, 2020
1
June, 2020
Software used
2
chromhmm
2
macs
Lab
4
AMP-T2D consortium
Project
4
AMP
RFA
4
AMP
biosample_type!
primary cell
Showing 4 of 4 results
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Download
FileSet
DSR430YYK
released
Annotation file set
: Chromatin states for BSS00371 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR968XUX
released
Annotation file set
: Chromatin states for BSS00369 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR744GOP
released
Annotation file set
: Accessible chromatin annotation for Neural Cerebrum frontal OC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR423PZC
released
Annotation file set
: Accessible chromatin annotation of brain frontal cortex from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP