Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
3
target gene predictions
2
accessible chromatin
2
binding sites
2
candidate regulatory elements
2
chromatin state
2
histone modifications
Annotation Category
4
cis-regulatory elements
Annotation type Category
2
ChIP-seq
2
snATAC-seq
Available data
2
bed bed3+
2
bigWig
1
bed bed9
1
bed bed9+
File set status
4
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
4
Homo sapiens
Biosample type
4
primary cell
Biosample term
2
megakaryocyte
1
CD34-negative, CD41-positive, CD42-positive megakaryocyte cell
1
stromal cell of bone marrow
Organ
265
epithelium
136
connective tissue
127
kidney
114
brain
101
musculature of body
86
lung
82
pancreas
80
intestine
77
heart
70
limb
69
vasculature
68
eye
blood vessel
48
skin of body
46
large intestine
42
extraembryonic component
41
liver
40
embryo
39
bodily fluid
37
blood
32
stomach
30
bone element
23
small intestine
22
mammary gland
21
adrenal gland
20
placenta
19
artery
18
prostate gland
17
adipose tissue
17
ureter
16
lymph node
13
gonad
13
penis
13
thymus
11
esophagus
11
skeleton
10
spinal cord
8
spleen
7
lymphoid tissue
7
nerve
7
uterus
7
vein
6
lymphatic vessel
6
ovary
6
testis
6
thyroid gland
5
bronchus
5
mouth
4
bone marrow
3
breast
3
tongue
3
urinary bladder
2
nose
2
vagina
1
trachea
Life stage
1
child
1
unknown
Date released
1
January, 2021
1
May, 2022
1
November, 2021
1
September, 2022
Software used
2
chromhmm
2
macs
Lab
2
AMP-T2D consortium
1
Bing Ren, UCSD
1
Kyle Gaulton, UCSD
Project
2
AMP
1
ENCODE
1
T1D
RFA
2
AMP
1
ENCODE3
1
T1D
month_released!
March, 2020
organ_slims!
blood vessel
Showing 4 of 4 results
table-tab-icon
matrix-icon
Download
FileSet
DSR315JBI
released
Annotation file set
: Chromatin states for BSS01661 using the 18-state Roadmap model from EpiMap
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR180LXT
released
Annotation file set
: Chromatin state of CD34-negative, CD41-positive, CD42-positive megakaryocyte cell from BLUEPRINT ChromHmm Segmentation of ChIP-Seq data
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR326TXQ
released
Annotation file set
: Accessible chromatin annotation of Fetal Megakaryocyte from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR213MXZ
released
Annotation file set
: accessible chromatin annotation from snATAC-seq of megakaryocyte
Lab:
Kyle Gaulton, UCSD
Project:
T1D