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Schema
Citing CMDGA
Clear Filters
Annotation type
7
gene expression
5
candidate regulatory elements
3
chromatin state
3
target gene predictions
2
accessible chromatin
1
eQTL
0
differential activity
0
sQTL
Annotation Category
2
cis-regulatory elements
Annotation type Category
2
ATAC-seq
Available data
2
bed bed3+
2
bigWig
File set status
2
released
Genome assembly (visualization)
2
hg19
Biosample type
2
primary cell
Biosample term
23
retina
20
pigmented layer of retina
19
monocyte
16
endothelial cell
16
fibroblast
13
excitatory neuron
13
macrophage
11
pancreatic beta cell
11
pancreatic ductal cell
10
kidney
10
neural progenitor cell
10
pancreatic acinar cell
10
pancreatic alpha cell
10
pericyte cell
9
EndoC_BH1
9
islet of Langerhans
9
retinal pigment epithelial cell
9
smooth muscle cell
8
B cell
8
astrocyte
8
hepatocyte
8
pancreatic delta cell
7
T cell
7
pancreatic stellate cell
6
SGBS preadipocytes
6
adipocyte
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
glutamatergic neuron
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
erythroblast
5
heart
5
inhibitory neuron
5
liver
5
osteoblast
5
pancreas
5
regulatory T cell
5
skeletal muscle fiber
5
skeletal muscle satellite cell
4
fibroblast of cardiac tissue
4
memory B cell
4
natural killer cell
4
pancreatic endothelial cell
4
type II pneumocyte
3
cardiac fibroblast
3
T-helper 1 cell
3
colon epithelial cell
3
coronary artery
3
cortical cell of adrenal gland
3
endothelial cell of lymphatic vessel
3
enterocyte
3
gabaergic neuron
3
glomerular visceral epithelial cell
3
heart left ventricle
3
hepatic stellate cell
3
mesenchymal stem cell
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic quiescent stellate cell
3
right atrium auricular region
3
skin fibroblast
3
stomach
3
subcutaneous adipose tissue
3
tibial artery
3
tibial nerve
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
Ammon's horn
2
B Cell
2
CD4-positive helper T cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
HepG2
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Muller cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Rh-4 cell
2
T Cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
acute myeloid leukemia cell
2
adipose tissue
2
adipose-derived stem cell
2
aortic endothelial cell
2
basal cell
2
blood vessel smooth muscle cell
2
bone marrow cell
2
brain
2
brain pericyte
2
capillary endothelial cell
2
cardiac muscle cell
2
caudate nucleus
2
central memory CD8-positive, alpha-beta T cell
2
choroid plexus epithelial cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
endothelial cell of umbilical vein
2
enteric neuron
2
enteric smooth muscle cell
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
frontal cortex
2
gamma-delta T cell
2
glial cell
2
globus pallidus
2
glomerular endothelial cell
2
keratinocyte
2
kidney glomerular epithelial cell
2
kidney tubule cell
2
leukocyte
2
luminal epithelial cell of mammary gland
2
mammary gland epithelial cell
2
mature natural killer cell
2
medulla oblongata
2
megakaryocyte
2
memory T cell
2
memory regulatory T cell
2
mesangial cell
2
mesothelial cell
2
midbrain
2
muscle of leg
2
naive regulatory T cell
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
neuron
2
occipital lobe
2
oligodendrocyte
2
oligodendrocyte precursor cell
2
omental fat pad
2
pancreatic polypeptide-secreting cell
2
plasma cell
2
plasmacytoid dendritic cell
2
pons
2
putamen
2
renal cortical epithelial cell
2
renal pelvis
Date released
2
May, 2020
Lab
2
AMP-T2D consortium
Project
2
AMP
RFA
2
AMP
award.project!
community
Showing 2 of 2 results
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Download
FileSet
DSR623HXM
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of normal T-helper 17 cell
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR976ETR
released
Annotation file set
: GSE118189 ATACseq accessible chromatin of LPS-stimulated T-helper 17 cell
Lab:
AMP-T2D consortium
Project:
AMP