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Getting started
Schema
Citing CMDGA
Clear Filters
Annotation type
11
candidate regulatory elements
8
chromatin state
7
target gene predictions
3
accessible chromatin
2
variant allelic effects
1
eQTL
1
gene expression
1
histone modifications
0
differential activity
Annotation Category
3
cis-regulatory elements
2
Genetic variant effects
Annotation type Category
3
DNase-seq
2
ATAC-seq
Available data
5
bed bed3+
3
bigWig
File set status
5
released
Genome assembly (visualization)
5
hg19
3
GRCh38
Organism
5
Homo sapiens
Biosample type
5
tissue
Biosample term
24
retina
22
fibroblast
20
pigmented layer of retina
18
endothelial cell
18
monocyte
16
macrophage
13
excitatory neuron
12
EndoC_BH1
12
pancreatic beta cell
12
pancreatic ductal cell
11
kidney
11
pancreatic acinar cell
11
pancreatic alpha cell
11
smooth muscle cell
10
hepatocyte
10
neural progenitor cell
10
pericyte cell
9
T cell
9
pancreatic delta cell
9
retinal pigment epithelial cell
8
B cell
8
astrocyte
8
islet of Langerhans
7
adipocyte
7
heart
7
induced pluripotent stem cell
7
pancreatic stellate cell
7
skeletal muscle fiber
6
SGBS preadipocytes
6
embryonic stem cell
6
endothelial cell of hepatic sinusoid
6
enterocyte
6
glutamatergic neuron
6
pancreas
5
cardiac fibroblast
5
CD8-positive, alpha-beta T cell
5
chondrocyte
5
coronary artery
5
erythroblast
5
heart left ventricle
5
inhibitory neuron
5
liver
5
osteoblast
5
regulatory T cell
5
right atrium auricular region
5
skeletal muscle satellite cell
5
tibial artery
5
tibial nerve
5
type II pneumocyte
4
Pancreatic progenitors (progenitor cell of endocrine pancreas)
4
basal cell
4
cardiac muscle cell
4
cortical cell of adrenal gland
4
fibroblast of cardiac tissue
4
glomerular visceral epithelial cell
4
hepatic stellate cell
4
memory B cell
4
myofibroblast cell
4
natural killer cell
4
pancreatic endothelial cell
4
subcutaneous adipose tissue
3
Schwann cell
3
T-helper 1 cell
3
adipose tissue
3
brain
3
brain pericyte
3
caudate nucleus
3
choroid plexus epithelial cell
3
colon epithelial cell
3
endothelial cell of lymphatic vessel
3
endothelial cell of umbilical vein
3
frontal cortex
3
gabaergic neuron
3
globus pallidus
3
glomerular endothelial cell
3
goblet cell
3
keratinocyte
3
kidney glomerular epithelial cell
3
mammary gland epithelial cell
3
medulla oblongata
3
mesenchymal stem cell
3
mesothelial cell
3
midbrain
3
naive B cell
3
naive thymus-derived CD8-positive, alpha-beta T cell
3
occipital lobe
3
pancreatic MUC5B+ductal cell
3
pancreatic alpha+beta cell
3
pancreatic cycling alpha cell
3
pancreatic gamma+epsilon cell
3
pancreatic macrophage cell
3
pancreatic mast cell
3
pancreatic polypeptide-secreting cell
3
pancreatic quiescent stellate cell
3
pons
3
putamen
3
renal cortical epithelial cell
3
renal pelvis
3
skeletal muscle myoblast
3
skin fibroblast
3
stomach
3
superior temporal gyrus
3
type I muscle cell
3
type I pneumocyte
3
type II muscle cell
2
hindlimb muscle
2
muscle of leg
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Adaptive / Maladaptive / Repairing Proximal Tubule Epithelial Cell
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 1
2
Adaptive / Maladaptive / Repairing Thick Ascending Limb Cell Type 2
2
Afferent / Efferent Arteriole Endothelial Cell
2
Ammon's horn
2
B Cell
2
CD4-positive helper T cell
2
Classical Dendritic Cell
2
Connecting Tubule Cell
2
Connecting Tubule Intercalated Cell Type A
2
Connecting Tubule Principal Cell
2
Cortical Thick Ascending Limb Cell
2
Cycling Endothelial Cell
2
Cycling Epithelial Cell
2
Cycling T Cell
2
Cytotoxic T Cell
2
Degenerative Connecting Tubule Cell
2
Degenerative Connecting Tubule Cell / Principal Cell
2
Degenerative Cortical Thick Ascending Limb Cell
2
Degenerative Distal Convoluted Tubule Cell
2
Degenerative Intercalated Cell Type A
2
Degenerative Peritubular Capillary Endothelial Cell
2
Degenerative Principal Cell
2
Degenerative Proximal Tubule Epithelial Cell
2
Degenerative Proximal Tubule Epithelial Cell / Descending Thin Limb Cell
2
Degenerative Vascular Smooth Muscle Cell
2
Descending Thin Limb Cell Type 1
2
Distal Convoluted Tubule Cell Type 1
2
Fibroblast
2
Glomerular Capillary Endothelial Cell
2
HepG2
2
Intercalated Cell Type A
2
Intercalated Cell Type B
2
Lymphatic Endothelial Cell
2
M2 Macrophage
2
MIN6
2
Medullary Thick Ascending Limb Cell
2
Mesangial Cell
2
Monocyte
2
Monocyte-derived Cell
2
Muller cell
2
Myofibroblast
2
Natural Killer T Cell
2
Natural Killer T Cell Type 1
2
Natural Killer T Cell Type 2
2
Non-Classical Monocyte
2
Parietal Epithelial Cell
2
Peritubular Capillary Endothelial Cell
2
Plasma Cell
2
Plasmacytoid Dendritic Cell
2
Podocyte
2
Principal Cell
2
Proximal Tubule Epithelial Cell Segment 1 and 2
2
Proximal Tubule Epithelial Cell Segment 3
2
Regulatory T Cell
2
Renin-positive Juxtaglomerular Granular Cell
2
Rh-4 cell
2
T Cell
2
T follicular helper cell
2
T-helper 17 cell
2
T-helper 2 cell
2
Transitional Principal-Intercalated Cell
2
Vascular Smooth Muscle Cell / Pericyte
2
acute myeloid leukemia cell
2
adipose-derived stem cell
2
aortic endothelial cell
2
ascending aorta
2
astrocyte of the cerebellum
2
astrocyte of the hippocampus
2
blood vessel smooth muscle cell
2
bone marrow cell
capillary endothelial cell
2
central memory CD8-positive, alpha-beta T cell
2
ciliated cell
2
club cell
2
differentiating adipose-derived stem cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
endocardial cell
2
enteric neuron
2
enteric smooth muscle cell
2
epithelial cell of esophagus
2
epithelial cell of proximal tubule
2
erythroid cell
2
extracellular matrix secreting cell
2
fetal cardiomyocyte
2
gamma-delta T cell
2
glial cell
2
heart right ventricle
2
kidney capillary endothelial cell
2
kidney epithelial cell
Organ
5
heart
Life stage
3
adult
1
fetal
Date released
2
January, 2020
2
May, 2020
1
October, 2019
Software used
3
macs
2
deltasvm
Lab
5
AMP-T2D consortium
Project
5
AMP
RFA
5
AMP
biosample_term_name!
capillary endothelial cell
Showing 5 of 5 results
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Download
FileSet
DSR691DGU
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart left ventricle ATAC-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR714XJR
released
Annotation file set
: Genetic variants with deltaSVM predictions in heart left ventricle fetal DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR193GSB
released
Annotation file set
: Accessible chromatin annotation of heart left ventricle fetal from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR231CTC
released
Annotation file set
: Accessible chromatin annotation of heart left ventricle adult from DHS-seq
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR571URP
released
Annotation file set
: Heart left ventricle accessible chromatin annotation of overlapping ATAC-seq sites from 2 samples with most significant peak selected
Lab:
AMP-T2D consortium
Project:
AMP