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Schema
Citing CMDGA
Clear Filters
Annotation type
7
candidate regulatory elements
4
accessible chromatin
3
gene expression
3
target gene predictions
2
binding sites
2
chromatin state
2
differential activity
1
histone modifications
Annotation Category
4
cis-regulatory elements
2
Gene expression levels
Annotation type Category
3
snATAC-seq
2
single cell RNA-seq
1
DNase-seq
Available data
4
bed bed3+
3
bigWig
2
tsv
File set status
6
released
Genome assembly (visualization)
4
hg19
2
GRCh38
Organism
6
Homo sapiens
Biosample type
5
primary cell
1
in vitro differentiated cells
Biosample term
3
endothelial cell of lymphatic vessel
2
Lymphatic Endothelial Cell
1
dermis microvascular lymphatic vessel endothelial cell
Disease term
1
Acute kidney failure, unspecified
1
Chronic kidney disease (CKD)
Organ
304
epithelium
106
kidney
102
connective tissue
98
pancreas
59
eye
54
vasculature
42
brain
38
blood vessel
28
liver
28
musculature of body
26
heart
21
intestine
20
limb
15
bone element
15
lung
13
artery
13
skin of body
12
blood
12
bodily fluid
12
embryo
10
large intestine
9
adipose tissue
9
extraembryonic component
8
lymph node
8
skeleton
8
stomach
7
adrenal gland
7
mammary gland
6
lymphatic vessel
5
gonad
5
prostate gland
4
esophagus
4
placenta
4
ureter
3
bronchus
3
nerve
3
penis
3
small intestine
3
uterus
2
bone marrow
2
lymphoid tissue
2
ovary
2
spinal cord
2
spleen
2
testis
2
thymus
2
thyroid gland
2
vein
1
breast
1
mouth
1
nose
1
tongue
1
trachea
1
urinary bladder
Life stage
2
adult
Date released
2
November, 2021
2
September, 2023
1
April, 2020
1
June, 2020
Software used
3
macs
2
deseq2
Lab
2
Bing Ren, UCSD
2
KPMP
1
AMP-T2D consortium
1
Xin Sun, UCSD
Project
2
ENCODE
2
KPMP
1
AMP
1
LungMap
RFA
2
ENCODE3
2
KPMP
1
AMP
1
LungMap2
biosample_term_name!
T follicular helper cell
Showing 6 of 6 results
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Download
FileSet
DSR840KPU
released
Annotation file set
: Differential activity annotation of Lymphatic Endothelial Cell between CKD and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR737GXW
released
Annotation file set
: Differential activity annotation of Lymphatic Endothelial Cell between AKI and healthy individuals from KPMP scRNA-seq ( ~disease type + age + gender )
Lab:
KPMP
Project:
KPMP
FileSet
DSR165PFW
released
Annotation file set
: ATAC-seq peaks in lymphatic endothelial cells from lung snATAC-seq
Lab:
Xin Sun, UCSD
Project:
LungMap
FileSet
DSR427DYD
released
Annotation file set
: Accessible chromatin annotation of Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR093JYI
released
Annotation file set
: Accessible chromatin annotation of Fetal Lymphatic Endothelial Cell from snATAC from Bing Ren Lab
Lab:
Bing Ren, UCSD
Project:
ENCODE
FileSet
DSR841NUD
released
Annotation file set
: Accessible chromatin annotation for Cardiovascular HMVEC from ChIP-atlas
Lab:
AMP-T2D consortium
Project:
AMP