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Schema
Citing CMDGA
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Annotation type
6
eQTL
5
gene expression
3
Fine-mapped variants
2
accessible chromatin
2
candidate regulatory elements
1
chromatin state
1
differential activity
1
variant allelic effects
Annotation Category
2
cis-regulatory elements
1
Gene expression levels
Annotation type Category
2
ATAC-seq
1
RNA-seq
Available data
2
bed bed3+
2
bigWig
1
tsv
File set status
3
released
Genome assembly (visualization)
2
GRCh38
2
hg19
Organism
3
Homo sapiens
Biosample type
3
tissue
Biosample term
16
fibroblast
10
pericyte cell
7
pancreatic stellate cell
6
adipocyte
5
chondrocyte
5
osteoblast
4
fibroblast of cardiac tissue
3
cardiac fibroblast
3
hepatic stellate cell
3
mesenchymal stem cell
3
pancreatic quiescent stellate cell
3
skin fibroblast
3
subcutaneous adipose tissue
2
Adaptive / Maladaptive / Repairing Fibroblast
2
Fibroblast
2
Mesangial Cell
2
adipose tissue
2
brain pericyte
2
extracellular matrix secreting cell
2
mesangial cell
2
omental fat pad
1
GM23248
1
SGBS preadipocytes
1
adipose-derived mesenchymal stem cell
1
dedifferentiated amniotic fluid mesenchymal stem cell
1
fibroblast of mammary gland
1
fibroblast of peridontal ligament
1
fibroblast of pulmonary artery
1
fibroblast of the conjunctiva
1
fibroblast of villous mesenchyme
1
foreskin fibroblast
1
luteal cell
1
olfactory neurosphere cell line
1
preadipocyte
1
pulmonary interstitial fibroblast
1
stromal cell
1
visceral abdominal adipose tissue
Disease term
1
coronary artery disease
Organ
3
adipose tissue
3
connective tissue
0
nose
Life stage
2
adult
Date released
1
February, 2024
1
January, 2020
1
September, 2018
Software used
2
macs
1
deseq2
Lab
3
AMP-T2D consortium
Project
3
AMP
RFA
3
AMP
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pituitary gland
Showing 3 of 3 results
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Download
FileSet
DSR639EWK
released
Annotation file set
: Tissue-specific differentially expressed genes for CAD case/control status from STARNET bulk RNA seq data for subcutaneous adipose tissue (FDR=10%)
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
DSR687BVG
released
Annotation file set
: Accessible chromatin annotation of adipose white tissue
Lab:
AMP-T2D consortium
Project:
AMP
FileSet
TSTSR978YHK
released
Annotation file set
: ATAC-seq sites in subcutaneous adipose tissue for 1 sample from ENCODE
Lab:
AMP-T2D consortium
Project:
AMP